View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0024_low_13 (Length: 226)

Name: NF0024_low_13
Description: NF0024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0024_low_13
NF0024_low_13
[»] chr6 (2 HSPs)
chr6 (1-225)||(24076019-24076230)
chr6 (24-54)||(5942532-5942562)
[»] scaffold0111 (1 HSPs)
scaffold0111 (67-100)||(37407-37440)
[»] chr4 (1 HSPs)
chr4 (61-113)||(2653735-2653787)
[»] chr7 (1 HSPs)
chr7 (66-113)||(41417254-41417301)
[»] chr3 (1 HSPs)
chr3 (18-52)||(55070189-55070223)
[»] chr5 (1 HSPs)
chr5 (60-109)||(18303061-18303110)
[»] chr2 (2 HSPs)
chr2 (66-114)||(23403375-23403423)
chr2 (66-114)||(29035045-29035093)
[»] chr1 (1 HSPs)
chr1 (67-114)||(47203772-47203820)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24076019 - 24076230
Alignment:
Q  1 atcaaacctctttaccaaactctgttgatagagacattgcataatatatacagaagtttgaacatcccacttattcaccttaaatgtgaatttttagcta 100  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||||||||  |   ||| ||||||||||||||||| ||||||||||||||||||||||    
T  24076019 atcaaacctctctaccaagctctgttgatagggacattgcataatatataggg---tttaaacatcccacttattcatcttaaatgtgaatttttagcta 24076115  T
Q  101 ctagactacttgatnnnnnnnnnnnnnnnnnntcaaacattttgtgccaaaataatccaatggttaggtaatgtaattttctagttctccttttagttta 200  Q
    ||| ||||||||||                  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24076116 ctaaactacttgataaaaaaaa----------tcaaaccttttgtgccaaaataatccaatggttaggtaatgtaattttctagttctcctttttgttta 24076205  T
Q  201 cattgctcgatttcttcttttatat 225  Q
    |||||||||||||||||||||||||    
T  24076206 cattgctcgatttcttcttttatat 24076230  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 5942562 - 5942532
Alignment:
Q  24 gttgatagagacattgcataatatatacaga 54  Q
    |||||||||||||||||||||||||||||||    
T  5942562 gttgatagagacattgcataatatatacaga 5942532  T

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Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 37407 - 37440
Alignment:
Q  67 ccacttattcaccttaaatgtgaatttttagcta 100  Q
    ||||||||||||||||||||||||||||||||||    
T  37407 ccacttattcaccttaaatgtgaatttttagcta 37440  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 2653787 - 2653735
Alignment:
Q  61 aacatcccacttattcaccttaaatgtgaatttttagctactagactacttga 113  Q
    ||||||||||||||||||||||||  ||||||| || |||||| |||||||||    
T  2653787 aacatcccacttattcaccttaaagatgaatttctaactactacactacttga 2653735  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 41417301 - 41417254
Alignment:
Q  66 cccacttattcaccttaaatgtgaatttttagctactagactacttga 113  Q
    ||||||||||||| ||||| ||||||||||||| | ||||||||||||    
T  41417301 cccacttattcactttaaaagtgaatttttagccattagactacttga 41417254  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 55070223 - 55070189
Alignment:
Q  18 aactctgttgatagagacattgcataatatataca 52  Q
    ||||||||||||||| |||||||||||||||||||    
T  55070223 aactctgttgatagatacattgcataatatataca 55070189  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 18303110 - 18303061
Alignment:
Q  60 gaacatcccacttattcaccttaaatgtgaatttttagctactagactac 109  Q
    ||||| ||||||||||||| ||||| |||||||| |||| ||||||||||    
T  18303110 gaacaccccacttattcactttaaaagtgaatttctagccactagactac 18303061  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 23403375 - 23403423
Alignment:
Q  66 cccacttattcaccttaaatgtgaatttttagctactagactacttgat 114  Q
    ||||||||||||||||||| |||||||| |||| | ||| |||||||||    
T  23403375 cccacttattcaccttaaaggtgaatttatagccattaggctacttgat 23403423  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 29035045 - 29035093
Alignment:
Q  66 cccacttattcaccttaaatgtgaatttttagctactagactacttgat 114  Q
    ||||||||||||| ||||| |||||||| |||| ||||| |||||||||    
T  29035045 cccacttattcactttaaaagtgaatttctagccactaggctacttgat 29035093  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 47203820 - 47203772
Alignment:
Q  67 ccacttattcacctt-aaatgtgaatttttagctactagactacttgat 114  Q
    ||||||||||||||| ||||||||||||||| | |||| ||||||||||    
T  47203820 ccacttattcacctttaaatgtgaatttttaaccactaaactacttgat 47203772  T

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