View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0024_low_6 (Length: 266)
Name: NF0024_low_6
Description: NF0024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0024_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 25802673 - 25802872
Alignment:
| Q |
38 |
aatggtaacatgagaaaatgaattcaataccttagcaacaatggtaacatgagaaaatgaattcctacctcatgttttgttcactgatttttgtaaagcc |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802673 |
aatggtaacatgagaaaatgaattcaataccttagcaataatggtaacatgagaaaatgaattcctacctcatgttttgttcactgatttttgtaaagcc |
25802772 |
T |
|
| Q |
138 |
tgagaaataagtattgaaccaaccattatgaaatgtcggtctagtaatataaagttattcaactccatttgcagaatagggatggttggaaagtactttc |
237 |
Q |
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| T |
25802773 |
tgagaaatgagtattgaaccaaccattatgaaatgtcggtctagtaatctaaagttattcacctccatttgcagaatagggatggttggaaagtactttc |
25802872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25802675 - 25802736
Alignment:
| Q |
1 |
tggtaacatgagaaaatgaattcaataccttagcaacaatggtaacatgagaaaatgaattc |
62 |
Q |
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| T |
25802675 |
tggtaacatgagaaaatgaattcaataccttagcaataatggtaacatgagaaaatgaattc |
25802736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 44346153 - 44346217
Alignment:
| Q |
121 |
ctgatttttgtaaagcctgagaaataagtattgaaccaaccattatgaaatgtcggtctagtaat |
185 |
Q |
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| T |
44346153 |
ctgatttttgtaaagcctgagaaagaagtattgaaccagccattttgaaatggcggtctagtaat |
44346217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 44346761 - 44346810
Alignment:
| Q |
187 |
taaagttattcaactccatttgcagaatagggatggttggaaagtacttt |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||| | ||||||| ||||||||||| |
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| T |
44346761 |
taaagttattcacctccatttgcagaattgagatggtttgaaagtacttt |
44346810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 6827243 - 6827274
Alignment:
| Q |
38 |
aatggtaacatgagaaaatgaattcaatacct |
69 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
6827243 |
aatggtaacatgagaaaatgaattcaatacct |
6827274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 6827245 - 6827274
Alignment:
| Q |
1 |
tggtaacatgagaaaatgaattcaatacct |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
6827245 |
tggtaacatgagaaaatgaattcaatacct |
6827274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 69
Target Start/End: Complemental strand, 9822901 - 9822870
Alignment:
| Q |
38 |
aatggtaacatgagaaaatgaattcaatacct |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9822901 |
aatggtaacatgagaaaatgaattcaatacct |
9822870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 9822899 - 9822870
Alignment:
| Q |
1 |
tggtaacatgagaaaatgaattcaatacct |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
9822899 |
tggtaacatgagaaaatgaattcaatacct |
9822870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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