View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0025-Insertion-1 (Length: 978)
Name: NF0025-Insertion-1
Description: NF0025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0025-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 811; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 5 - 959
Target Start/End: Original strand, 23755501 - 23756453
Alignment:
| Q |
5 |
acactagcattttcatcttttgctgcacttgcacaaggaataagcttaaaagcttcattatctggtgtagtaccccttccacattcaccagcactttcaa |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755501 |
acactagcattttcatcttttgctgcacttgcacaaggaataagcttaaaagcttcattatctggtgtagtaccccttccacattcaccagcactttcaa |
23755600 |
T |
|
| Q |
105 |
ctctatgagttcctgcaacaaagactgcaataccaacaatgcacagcaatttcataagacccttcannnnnnnccccttaatatgtgtctaaatcactta |
204 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | |||||||| |||||||||||||| |
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| T |
23755601 |
ctctatgagttcctgcaacaaggactgcaataccaacaatgcacagcaatttcataagaccctccatttttttttc-ttaatatgcgtctaaatcactta |
23755699 |
T |
|
| Q |
205 |
gtgaaattaattagttctatgcaagaaccccatgcatttggtaggattttatagtactaaaaatgtggttggtctagtcatccacttagattaatggagc |
304 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755700 |
gtgaaattaattagttctatgcaacaaccccatgcatttggtgggattttatagtactaaaaatgtggttggtctagtcatccacttagattaatggagc |
23755799 |
T |
|
| Q |
305 |
ttgcactagttctaataggtgagtttttactatatcttattgcaccattagtaatnnnnnnnnttgtgtagacacaaatttgttaattatgttgtccaat |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23755800 |
ttgcactagttctaataggtgagtttttactatatcttattgcaccattagtaataaaaaaaattgtgtagacacaaatttgttaattatgttgtccaat |
23755899 |
T |
|
| Q |
405 |
atcaaggtcggtgagaattgtgtttattttcatatttgtaggtgtaaccattttttgcagtatgtaaattaaaggactatgtaagggtgacacctcattc |
504 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23755900 |
atcaaggtcggtgagaattgtgtttattttcatatttgtaggtgtaaccattttttgcagtatgtaaattaagggactatgtaagggtgacacctcattc |
23755999 |
T |
|
| Q |
505 |
tcaagcaaatgattcattgtcctttttgaaagcttagcaggaaaaacttttaagccaactaccacagaacactagctcacacacacttagctcaatgata |
604 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23756000 |
tcaagcaaatgattcattgccctttttgaaagcttag---gaacaacttttaagccaactaccacagaacactagctcacacacacttagctcaatgata |
23756096 |
T |
|
| Q |
605 |
cccctaaagtaggagtgcttatgtagactctattatggccctactttgatcgtaatttattggtttaattcaacttttgaattggatgggtcgaccgacc |
704 |
Q |
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| T |
23756097 |
cccctaaactaggagtgcttatgtagactctattatggccctactttgatcgtaatttattggtttaattcaacttttgaattggatgggtcgaccgacc |
23756196 |
T |
|
| Q |
705 |
ctcgtgcttgggggattgtagaccgaatgtgacttcgcctataggcccatcgctccccgtgcctggtcg--aagagacgaagcgcaagacccgaacacct |
802 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
23756197 |
ctcgtgcttgggggattgtagactgaatgtgacttcgcctataggcccatcgctccccgtgcctggttggagagagacgaagcgcaagacccgaacacct |
23756296 |
T |
|
| Q |
803 |
tgatcacatagtttggaggttaatcatctaactgactagggcgaagattggggcactaggaagcgttcgaatatctggtcacaactataaacttgatact |
902 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23756297 |
tgatcgcatagcttggaggttaatcatctaactgactagggcgaagattggggcactaggaagcgctcgaatatctggtcacaactataaacttgatact |
23756396 |
T |
|
| Q |
903 |
ttagcatggaaggatgtatgctgctctatgtgtgggcttgtgcccacacaaatttta |
959 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23756397 |
ttagcatggaaggatgtatgctgctctatgtgtgggcttgtgcccacacaaatttta |
23756453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 23779234 - 23779396
Alignment:
| Q |
5 |
acactagcattttcatcttttgctgcacttgcacaaggaataagcttaaaagcttcattatctggtgtagtaccccttccacattcaccagcactttcaa |
104 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23779234 |
acactagcattttcatcttgtgctgcacttgcacaaggagctagcttaaatgcttccatatctggtgtagtacctcttccacattcaccagcactttcaa |
23779333 |
T |
|
| Q |
105 |
ctctatgagttcctgcaacaaagactgcaataccaacaatgcacagcaatttcataagaccct |
167 |
Q |
| |
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| |||||| | |||||||||| |||| ||| |||||||| |||||||| ||||||||||||| |
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| T |
23779334 |
cactatgaatacctgcaacaaggactacaaaaccaacaaggcacagcatcttcataagaccct |
23779396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 209 - 610
Target Start/End: Original strand, 23779431 - 23779834
Alignment:
| Q |
209 |
aattaattagttctatgcaagaaccccatgcatttggtaggattttatagtactaaaaatgtggttggtctagtcatcca-cttagattaatggagcttg |
307 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||| | || |||||||| |||||||||||| |||||| ||||||||| |||||||||||||| |||| |
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| T |
23779431 |
aattaattagttctatgcaacaatgcaatgcatttgatggggttttataggactaaaaatgtgcttggtcgagtcatccaccttagattaatggaccttg |
23779530 |
T |
|
| Q |
308 |
cactagttctaataggtgagttt-ttactatatcttattgcacca-ttagtaatnnnnnnnnttgtgtagacacaaatttgttaattatgttgtccaata |
405 |
Q |
| |
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||||||| | ||| ||| ||||| || ||||||||||| |||| ||||||| |||||| ||||||||| || |||||||||||||||||| |
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| T |
23779531 |
cactagtacaaattggtaagtttcttcgcatatcttattgtaccacttagtaa-ataaaagcttgtgtcgacacaaatgtgataattatgttgtccaata |
23779629 |
T |
|
| Q |
406 |
tcaaggtcggtgagaattgtgtt--tattttcatatttgtaggtgtaaccattttttg-cagtatgtaaattaaagga-ctatgtaagggtgacacctca |
501 |
Q |
| |
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| || | |||| |||||| || | |||||||| || || | ||| ||||| || ||||||||||| | ||| |||||||| |||||||| ||| |
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| T |
23779630 |
ttaatttaagtgacaattgtttttgttttttcatacttcta-gagtagccattacctgtttgtatgtaaatttagggagctatgtaatggtgacacatca |
23779728 |
T |
|
| Q |
502 |
ttctcaagcaaatgattcattgtcctttttgaaagcttagcaggaaaaacttttaagccaactaccacagaacactagctcacacacacttagctcaatg |
601 |
Q |
| |
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||||||| ||| | || || || || |||||||||| | | || | ||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23779729 |
ttctcaatcaattaatccaatgcccattttgaaagcct---atgagtaccttttaaaccaactaccacagaacactagctcgtacacacttagctcaatg |
23779825 |
T |
|
| Q |
602 |
ataccccta |
610 |
Q |
| |
|
|| |||||| |
|
|
| T |
23779826 |
atgccccta |
23779834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 553 - 624
Target Start/End: Original strand, 33279160 - 33279231
Alignment:
| Q |
553 |
tttaagccaactaccacagaacactagctcacacacacttagctcaatgatacccctaaagtaggagtgctt |
624 |
Q |
| |
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||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||| || |||||||| |
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| T |
33279160 |
tttaaaccaactaccactgaacactagctcgtacacacttagctcaatgatgcccctaaactacgagtgctt |
33279231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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