View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0025-Insertion-10 (Length: 399)
Name: NF0025-Insertion-10
Description: NF0025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0025-Insertion-10 |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 186 - 399
Target Start/End: Original strand, 19510129 - 19510341
Alignment:
| Q |
186 |
caagttagcggagacaagctcgagttagtttagattagaagtggttaaaactgaattgttaaggtttttagctatttttgtacaagttagttagttttga |
285 |
Q |
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| T |
19510129 |
caagttagcggagacaagctcgagttagtttagattagaagtggttaaaactgaattgtttagttttttagctatttttgtacaagtta-ttagttttga |
19510227 |
T |
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| Q |
286 |
ataattacttgtagaacaagtaaagttaagtacatagcttttgtataaatatggtgtaaaccaagtttcattgctaatgagaatcataagtttacaatca |
385 |
Q |
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| T |
19510228 |
ataattacttgtagaacaagtaaagttaagtacatagcttttgtataaatatggtgtaaaccaagtttcattgctaatgagaatcataagtttacaatca |
19510327 |
T |
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| Q |
386 |
acaagtactttctc |
399 |
Q |
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| T |
19510328 |
acaagtactttctc |
19510341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 19509954 - 19510029
Alignment:
| Q |
8 |
gcttggtgcttctcaggacctgcagtgttctgaaaagagatgtctcttgctatgaatcctctaccactaacagctg |
83 |
Q |
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| T |
19509954 |
gcttggtgcttctcaggacctgcagtgttctgaaaagagatgtctcttgctatgaatcctctaccactaacagctg |
19510029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 19510048 - 19510085
Alignment:
| Q |
104 |
cgacgattagtaaggatcgatatctacttcataattat |
141 |
Q |
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| T |
19510048 |
cgacgattagtaaggatcgatatctacttcataattat |
19510085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 308
Target Start/End: Original strand, 38031021 - 38031142
Alignment:
| Q |
186 |
caagttagcggagacaagctcgagttagtttagattagaagtggttaaaactgaattgttaaggtttttagctatttttgtacaagttagttagttttga |
285 |
Q |
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| T |
38031021 |
caagttagctgagataagttcaagttagttgagattataagtagctaaaattgt-tagttaatgttgttagctatttttgtgcaagttagttagttttta |
38031119 |
T |
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| Q |
286 |
ataattacttgtagaacaagtaa |
308 |
Q |
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| T |
38031120 |
ataattacttgtagagcaagtaa |
38031142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 51526059 - 51525984
Alignment:
| Q |
8 |
gcttggtgcttctcaggacctgcagtgttctgaaaagagatgtctcttgctatgaatcctctaccactaacagctg |
83 |
Q |
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| T |
51526059 |
gcttggtgcttctcggcacctgcggtgttctgaaatgaaatgtcgcgtgctatgaaccctctaccacttacagctg |
51525984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 399
Target Start/End: Original strand, 25334533 - 25334659
Alignment:
| Q |
268 |
caagttagttagttttgaataattacttgtagaacaagtaaagttaagtacatagcttttgtataaatatggtgtaaaccaagtttcattgctaatgaga |
367 |
Q |
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| T |
25334533 |
caagtttgttagttttgaataattacttgtttagcaagtaatgt-----acatagcttgtatataagtatgacgtaaacccaatttcattgctaatgtga |
25334627 |
T |
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| Q |
368 |
atcataagtttacaatcaacaagtactttctc |
399 |
Q |
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| T |
25334628 |
ataacaagttttcaatcaataagaactttctc |
25334659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 399
Target Start/End: Original strand, 25568058 - 25568142
Alignment:
| Q |
315 |
gtacatagcttttgtataaatatggtgtaaaccaagtttcattgctaatgagaatcataagtttacaatcaacaagtactttctc |
399 |
Q |
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| T |
25568058 |
gtacatagcatgtatataagtatgatgtaaatccaatttcattgctaatgtgaataaaaagttttcaatcaataagaactttctc |
25568142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 298
Target Start/End: Original strand, 28067336 - 28067364
Alignment:
| Q |
270 |
agttagttagttttgaataattacttgta |
298 |
Q |
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| T |
28067336 |
agttagttagttttgaataattacttgta |
28067364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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