View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0025-Insertion-2 (Length: 913)

Name: NF0025-Insertion-2
Description: NF0025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0025-Insertion-2
NF0025-Insertion-2
[»] chr2 (14 HSPs)
chr2 (232-913)||(26239377-26240060)
chr2 (495-913)||(19046684-19047102)
chr2 (495-913)||(39833011-39833424)
chr2 (26-197)||(26239171-26239342)
chr2 (666-866)||(19045479-19045681)
chr2 (666-866)||(39834722-39834924)
chr2 (49-197)||(19046364-19046518)
chr2 (51-197)||(39833588-39833740)
chr2 (49-162)||(19046137-19046249)
chr2 (238-331)||(19046534-19046627)
chr2 (238-331)||(39833480-39833573)
chr2 (49-158)||(39834152-39834264)
chr2 (427-470)||(19046623-19046666)
chr2 (427-470)||(39833441-39833484)
[»] chr3 (16 HSPs)
chr3 (238-913)||(10023859-10024538)
chr3 (493-913)||(32968022-32968442)
chr3 (495-913)||(42394574-42394991)
chr3 (49-197)||(10023699-10023846)
chr3 (49-197)||(32968612-32968764)
chr3 (666-866)||(42396014-42396216)
chr3 (666-836)||(32969797-32969968)
chr3 (71-197)||(42395155-42395281)
chr3 (666-876)||(10023087-10023299)
chr3 (49-162)||(42395446-42395558)
chr3 (238-331)||(42395049-42395142)
chr3 (238-331)||(32968505-32968598)
chr3 (74-162)||(32968880-32968967)
chr3 (427-470)||(42395010-42395053)
chr3 (427-477)||(32968459-32968509)
chr3 (49-78)||(42395302-42395331)
[»] scaffold0038 (6 HSPs)
scaffold0038 (495-913)||(112182-112600)
scaffold0038 (49-197)||(111862-112016)
scaffold0038 (666-836)||(110977-111148)
scaffold0038 (49-162)||(111635-111747)
scaffold0038 (238-331)||(112032-112125)
scaffold0038 (427-470)||(112121-112164)
[»] chr6 (16 HSPs)
chr6 (495-913)||(16273290-16273708)
chr6 (427-913)||(22824598-22825080)
chr6 (495-913)||(28321073-28321491)
chr6 (49-197)||(28320758-28320908)
chr6 (49-197)||(22825183-22825330)
chr6 (666-866)||(16274714-16274916)
chr6 (682-866)||(22825785-22825971)
chr6 (71-197)||(16273872-16273998)
chr6 (666-836)||(28319871-28320042)
chr6 (49-158)||(16274151-16274259)
chr6 (49-162)||(28320530-28320642)
chr6 (238-331)||(16273765-16273858)
chr6 (238-331)||(22825076-22825169)
chr6 (238-331)||(28320923-28321016)
chr6 (427-470)||(28321012-28321055)
chr6 (49-78)||(16274003-16274032)
[»] chr1 (6 HSPs)
chr1 (495-913)||(29995951-29996369)
chr1 (666-866)||(29997375-29997577)
chr1 (71-197)||(29996533-29996659)
chr1 (49-158)||(29996812-29996920)
chr1 (238-331)||(29996426-29996519)
chr1 (49-78)||(29996664-29996693)
[»] scaffold0061 (4 HSPs)
scaffold0061 (427-913)||(40569-41051)
scaffold0061 (49-197)||(40309-40465)
scaffold0061 (49-160)||(40082-40192)
scaffold0061 (238-331)||(40480-40573)
[»] scaffold0017 (4 HSPs)
scaffold0017 (427-913)||(157734-158216)
scaffold0017 (49-197)||(158320-158470)
scaffold0017 (49-160)||(158587-158697)
scaffold0017 (238-331)||(158212-158305)
[»] chr8 (1 HSPs)
chr8 (724-913)||(31973195-31973384)
[»] chr5 (1 HSPs)
chr5 (734-795)||(7968149-7968211)


Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 232 - 913
Target Start/End: Original strand, 26239377 - 26240060
Alignment:
Q  232 ggtagatttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26239377 ggtagatttttaacttttttaataatgacatgtttcagtatattcctatctaaatatccttctagacacttttgttagtctgatagtatatgttcgtgag 26239476  T
Q  332 tttcaagtgtgcttctttcaatatttcaggttgaaattatctcgatgcaa-----tgtgggttagtccatacaatgatagaaattctcatctagcggaca 426  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||     ||||||||| |||||||| |||||||||||||||||||| |||||    
T  26239477 tttgaagtgtgcttctttcaatgtttcaggttgaaattatctcgatgcaaagttttgtgggttaatccatacagtgatagaaattctcatctagtggaca 26239576  T
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatatcaagtttnnnnnnnnnnnnnncctattttaaacaatttcctcgtttgatttataga 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||              || |||||||||| |||||||||||||||||||||    
T  26239577 gtgagaatgatctcattgaattaatgggtccttgaactgaatatcaagtttaaaagaaaaaa---cccattttaaacactttcctcgtttgatttataga 26239673  T
Q  527 tattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactatagtgaattcagcataatactcaaatgagtttta 626  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  26239674 tattattgaaaaaacttaagatactttttagtttataaatataagttattttttatttgtttactattttgaattcatcataatactcaaatgagtttta 26239773  T
Q  627 agataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgttagtgtagaaattttatagtatcagctcatcaaa 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  26239774 agataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgttagtgtagaaattttataggatcagctcatcaaa 26239873  T
Q  727 atcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaatt 826  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  26239874 atcaatcatgtttgtgactttgaatgtggttaatattaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatc 26239973  T
Q  827 caatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagtcgcctttacacttgttcca 913  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||    
T  26239974 caatagaattttaggagtcaatttttacttttaacttatacgacatgtttgctaaaaataataagagtcacctttacacttattcca 26240060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 495 - 913
Target Start/End: Original strand, 19046684 - 19047102
Alignment:
Q  495 attttaaacaatttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactata 594  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19046684 attttaaacactttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttacaaacataagttattttttatttgtttactata 19046783  T
Q  595 gtgaattcagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgtta 694  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19046784 gtgaatacaacataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgtta 19046883  T
Q  695 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19046884 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 19046983  T
Q  795 taattattattgaaaatataattattcaaattcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagt 894  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  19046984 tgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataagagt 19047083  T
Q  895 cgcctttacacttgttcca 913  Q
      | |||||||||||||||    
T  19047084 aacttttacacttgttcca 19047102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 495 - 913
Target Start/End: Complemental strand, 39833424 - 39833011
Alignment:
Q  495 attttaaacaatttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactata 594  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||      |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39833424 attttaaacactttcctcgtttgaattatagatattattgaaaaa------gatactttttagtttacaaacataagttattttttatttgtttactata 39833331  T
Q  595 gtgaattcagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcatttt-gaatgtt 693  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  39833330 gtgaatacagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttgggacatataatgtaaacatgtttatttttgaatgtt 39833231  T
Q  694 agtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagtt 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39833230 agtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagtt 39833131  T
Q  794 gtaattattattgaaaatataattattcaaattcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagag 893  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  39833130 gtgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataagag 39833031  T
Q  894 tcgcctttacacttgttcca 913  Q
    |  |||||||||||||||||    
T  39833030 taacctttacacttgttcca 39833011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 26239171 - 26239342
Alignment:
Q  26 tagtgcaaatgtttataatagagattataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgatta 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  26239171 tagtgcaaatgtttataatagagattataattttgaaagttcaccatatatatgtgaaatttttttctatgcggaaatttatttgactttgaaatgatta 26239270  T
Q  126 ttaatgttcatcaaatagaaatttaatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26239271 ttaatgttcatcaaatagaaatttaatgacattcattatgtaattattagttgcgaagtgtttacgttctta 26239342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 666 - 866
Target Start/End: Original strand, 19045479 - 19045681
Alignment:
Q  666 taatgtaaacatgttcattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 764  Q
    ||||||||  ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  19045479 taatgtaacaatgtttattttgaatgttagtgtagaaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 19045578  T
Q  765 aatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaattt-taggagtcaatttttactcttaactt 863  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||| |||||| ||||||||||| ||||| || ||||||||||||| |||    
T  19045579 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaatttataggactctatttttactcttagctt 19045678  T
Q  864 ata 866  Q
    |||    
T  19045679 ata 19045681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 666 - 866
Target Start/End: Complemental strand, 39834924 - 39834722
Alignment:
Q  666 taatgtaaacatgttcattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 764  Q
    ||||||||  ||||| |||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  39834924 taatgtaacaatgtttattttgaatgttggtgtagaaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 39834825  T
Q  765 aatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaattt-taggagtcaatttttactcttaactt 863  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||| |||||| ||||||||||| ||||| |  ||||||||||||| |||    
T  39834824 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaatttataggactatatttttactcttagctt 39834725  T
Q  864 ata 866  Q
    |||    
T  39834724 ata 39834722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 19046364 - 19046518
Alignment:
Q  49 attataattttgaaagttcaccatat------atatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaata 142  Q
    ||||||||||||||||||||||||||      |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19046364 attataattttgaaagttcaccatatatatatatatgtgaagtttttttctctgcggaaatttatttgactttgaaatgattattaatgttcatcaaata 19046463  T
Q  143 gaaatttaatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  19046464 gaaatttaatgacattcattatgtaattattagttaaggagtgtttacgttctta 19046518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 39833740 - 39833588
Alignment:
Q  51 tataattttgaaagttcaccatatatat------gtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaataga 144  Q
    ||||||||||||||||||||||||||||      |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39833740 tataattttgaaagttcaccatatatatatatatgtgaagtttttttctctgcggaaatttatttgactttgaaatgattattaatgttcatcaaataga 39833641  T
Q  145 aatttaatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39833640 aatttaatgacattcattatgtaattattagttaaggagtgtttacgttctta 39833588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 19046137 - 19046249
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||    
T  19046137 attataattttgaatgttcaccatatatatgtgaag-ttttttctatgcggaaatttatttgactcttaaatgattattaatgtttatcaagtagaaatt 19046235  T
Q  149 taatgacattcatt 162  Q
    ||||||||||||||    
T  19046236 taatgacattcatt 19046249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 19046534 - 19046627
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||    
T  19046534 tttttaacttttctaataatgacatgttccagtatattcctttctaaatatccttccaaacacttttgttagtctgatagtatatgctcgtgag 19046627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 39833573 - 39833480
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    ||||||||| |||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||    
T  39833573 tttttaactattctaataatgacatgttccagtatattcctttctaaatatccttccaaacacttttgttagtctgatagtatatgctcgtgag 39833480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 39834264 - 39834152
Alignment:
Q  49 attataattttgaaagttcaccatatatat----gtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaataga 144  Q
    |||||||||||||| |||||||||||||||    |||||| |||||||||||||||||||||||||  | | ||||||||||||||||| ||||| ||||    
T  39834264 attataattttgaatgttcaccatatatatatatgtgaag-ttttttctatgcggaaatttatttggatcttaaatgattattaatgtttatcaagtaga 39834166  T
Q  145 aatttaatgacatt 158  Q
    ||||||||||||||    
T  39834165 aatttaatgacatt 39834152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 427 - 470
Target Start/End: Original strand, 19046623 - 19046666
Alignment:
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatat 470  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  19046623 gtgagattgatctcattgaattaatcggtccttgaactgaatat 19046666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 427 - 470
Target Start/End: Complemental strand, 39833484 - 39833441
Alignment:
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatat 470  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  39833484 gtgagattgatctcattgaattaatcggtccttgaactgaatat 39833441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 238 - 913
Target Start/End: Original strand, 10023859 - 10024538
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgagtttcaa 337  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||||||||||| || |||||||||||||||||||| |||||| | |||||||| ||    
T  10023859 tttttaacttttctaataatgacatgttctagtatattcctttctaaatatccttttaaacacttttgttagtctgatagtatatgctagtgagtttgaa 10023958  T
Q  338 gtgtgcttctttcaatatttcaggttgaaattatctcgatgcaa-----tgtgggttagtccatacaatgatagaaattctcatctagcggacagtgaga 432  Q
    ||||||||||| |||| |||||||| |||||||| |||||||||     |||||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  10023959 gtgtgcttcttgcaatgtttcaggt-gaaattatatcgatgcaaagttttgtgggttagtccatacagtgatagaaattctcatctagtggacaatgaga 10024057  T
Q  433 atgatctcattgaattaatgggtccttgaactgaatatcaagtttnnnnnnnnnnnnnncctattttaaacaatttcctcgtttgatttatagatattat 532  Q
     ||||||||||||||||||  ||||||||||||||||| ||||||               | |||||||||| || ||||||||||||||||||||||||    
T  10024058 ttgatctcattgaattaatcagtccttgaactgaatataaagtttaaaaaaaaaaaaaaaccattttaaacacttccctcgtttgatttatagatattat 10024157  T
Q  533 tgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactatagtgaattcagcataatactcaaatgagttttaagataa 632  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10024158 tgaaaaaacttaagatactttttagtttacaaaaataagttattttttatttgtttactatagtgaattcagcataatactcaaatgagttttaggataa 10024257  T
Q  633 attactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgttagtgtagaaattttatagtatcagctcatcaaaatcaat 732  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10024258 attactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgttaatgtagaaattttatagtatcagctcatcaaaatcaat 10024357  T
Q  733 catgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatag 832  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  10024358 catgtttgtgactttgaatgtggttaagatgaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaaatccaatag 10024457  T
Q  833 aattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagtcgcctttacacttgttcca 913  Q
    |||||||||||||||||||||||||||||||||| |||||||||  |||||||| |||||||| |||||||||||||||||    
T  10024458 aattttaggagtcaatttttactcttaacttatacgacatgtttgttaaaaatagtaagagtcacctttacacttgttcca 10024538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 493 - 913
Target Start/End: Complemental strand, 32968442 - 32968022
Alignment:
Q  493 ctattttaaacaatttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttacta 592  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  32968442 ctattttaaacactttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttacaaacataagttattctttatttgtttacta 32968343  T
Q  593 tagtgaattcagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgt 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32968342 tagtgaattcagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgt 32968243  T
Q  693 tagtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagt 792  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32968242 tagtgtagaaattttattgtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttgagataaaatcaaatgtttgaattgatctaaaagt 32968143  T
Q  793 tgtaattattattgaaaatataattattcaaattcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataaga 892  Q
    ||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  32968142 tgtgattattattgaaaatataattattcaaatctaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataaga 32968043  T
Q  893 gtcgcctttacacttgttcca 913  Q
    ||| |||||||||||||||||    
T  32968042 gtcacctttacacttgttcca 32968022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 495 - 913
Target Start/End: Complemental strand, 42394991 - 42394574
Alignment:
Q  495 attttaaacaatttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactata 594  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| |||||    
T  42394991 attttaaacactttcctcgtttgatttatagatattattgaaaaaacttaa-ataccttttagtttacaaacataagttattttttatttgtttgctata 42394893  T
Q  595 gtgaattcagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgtta 694  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42394892 gtgaatacaacataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgtta 42394793  T
Q  695 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 794  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42394792 gtgtagaaattttatagtatcagctcatcaaaatcaatcatctttgtgactttgaatgtgattaagataaaatcaaatgtttgaattgatctaaaagttg 42394693  T
Q  795 taattattattgaaaatataattattcaaattcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagt 894  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  42394692 tgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataagagt 42394593  T
Q  895 cgcctttacacttgttcca 913  Q
      | |||||||||||||||    
T  42394592 aacttttacacttgttcca 42394574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 10023699 - 10023846
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10023699 attataattttgaatgttcaccatatatatgtgaag-ttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 10023797  T
Q  149 taatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10023798 taatgacattcattatgtaattattagttaaggagtgtttacgttctta 10023846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 32968764 - 32968612
Alignment:
Q  49 attataattttgaaagttcacc----atatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaataga 144  Q
    ||||||||||||||||||||||    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32968764 attataattttgaaagttcaccgtatatatatatgtgaagtttttttctatgcgaaaatttatttgactttgaaatgattattaatgttcatcaaataga 32968665  T
Q  145 aatttaatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  32968664 aatttaatgacattcattatgtaattattagttaaggagtgtttacgttctta 32968612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 666 - 866
Target Start/End: Complemental strand, 42396216 - 42396014
Alignment:
Q  666 taatgtaaacatgttcattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 764  Q
    ||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  42396216 taatgtaacaatgtttattttgaatgttagtgtataaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 42396117  T
Q  765 aatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaatt-ttaggagtcaatttttactcttaactt 863  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||| |||||| ||||||||||  ||||| || ||||||||||||| |||    
T  42396116 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagctt 42396017  T
Q  864 ata 866  Q
    |||    
T  42396016 ata 42396014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 666 - 836
Target Start/End: Complemental strand, 32969968 - 32969797
Alignment:
Q  666 taatgtaaacatgttcattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 764  Q
    ||||||||  ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  32969968 taatgtaacaatgtttattttgaatgttagtgtagaaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 32969869  T
Q  765 aatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaatt 836  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||| |||||| ||||||||||    
T  32969868 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaatt 32969797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 42395281 - 42395155
Alignment:
Q  71 atatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatttaatgacattcattatgtaatt 170  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42395281 atatatatgtgaaggttttttctctgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatttaatgacattcattatgtaatt 42395182  T
Q  171 attagttgcggagtgtttacgttctta 197  Q
    || ||||  ||| ||||||||||||||    
T  42395181 atcagttaaggattgtttacgttctta 42395155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 666 - 876
Target Start/End: Original strand, 10023087 - 10023299
Alignment:
Q  666 taatgtaaacatgttcattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 764  Q
    ||||||||  ||||| ||||| |||||||| ||||||  ||||||||||||||||||||| ||| ||| |||||||||||||||| | ||||||||||||    
T  10023087 taatgtaacaatgtttatttttaatgttagagtagaaggttttatagtatcagctcatcacaattaattatgtttgtgactttgactatggttaagataa 10023186  T
Q  765 aatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaatt-ttaggagtcaatttttactcttaactt 863  Q
    ||||||||| ||||||||||||||||||||| ||| ||| ||| |||||||||| |||||| ||||||||||  ||||| || ||||||||||||| |||    
T  10023187 aatcaaatgcttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagctt 10023286  T
Q  864 atatgacatgttt 876  Q
    ||| | |||||||    
T  10023287 atacgtcatgttt 10023299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 42395558 - 42395446
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||    
T  42395558 attataattttgaatgttcaccatatatatgtgaaa-ttttttcaatgcggaaatttatttgactcttaaatgattattaatgtttatcaagtagaaatt 42395460  T
Q  149 taatgacattcatt 162  Q
    ||||||||||||||    
T  42395459 taatgacattcatt 42395446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 42395142 - 42395049
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||    
T  42395142 tttttaacttttctaataatgacatgttccagtatattcctttataaatatccttccagacacttttgttagtctgatagtatatgctcgtgag 42395049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 32968598 - 32968505
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||||||||||||||||||||||||||| || ||||||||| |||||||||||||| |||||||||||||||||| ||| |||||| |||||||    
T  32968598 tttttaacttttctaataatgacatgttccagtatattcctatctaaatatccttcaagacacttttgttagtctcatagtatatgctcgtgag 32968505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 32968967 - 32968880
Alignment:
Q  74 tatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatttaatgacattcatt 162  Q
    ||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| || |||||||||||||||||||    
T  32968967 tatatgtgaag-ttttttctatgcgaaaatttatttgactcttaaatgattattaatgtttatcaagtacaaatttaatgacattcatt 32968880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 427 - 470
Target Start/End: Complemental strand, 42395053 - 42395010
Alignment:
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatat 470  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  42395053 gtgagattgatctcattgaattaatcggtccttgaactgaatat 42395010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 32968509 - 32968459
Alignment:
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatatcaagttt 477  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||| |||    
T  32968509 gtgagattgatctaattgaattaatcggtccttgaactgaatatcaaattt 32968459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 42395331 - 42395302
Alignment:
Q  49 attataattttgaaagttcaccatatatat 78  Q
    ||||||||||||||||||||||||||||||    
T  42395331 attataattttgaaagttcaccatatatat 42395302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 495 - 913
Target Start/End: Original strand, 112182 - 112600
Alignment:
Q  495 attttaaacaatttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactata 594  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  112182 attttaaacactttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttacaaacataagttattttttatttgtttactata 112281  T
Q  595 gtgaattcagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgtta 694  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  112282 gtgaatacaacataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgtta 112381  T
Q  695 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  112382 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 112481  T
Q  795 taattattattgaaaatataattattcaaattcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagt 894  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  112482 tgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataagagt 112581  T
Q  895 cgcctttacacttgttcca 913  Q
      | |||||||||||||||    
T  112582 aacttttacacttgttcca 112600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 111862 - 112016
Alignment:
Q  49 attataattttgaaagttcaccatat------atatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaata 142  Q
    ||||||||||||||||||||||||||      |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  111862 attataattttgaaagttcaccatatatatatatatgtgaagtttttttctctgcggaaatttatttgactttgaaatgattattaatgttcatcaaata 111961  T
Q  143 gaaatttaatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  111962 gaaatttaatgacattcattatgtaattattagttaaggagtgtttacgttctta 112016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 666 - 836
Target Start/End: Original strand, 110977 - 111148
Alignment:
Q  666 taatgtaaacatgttcattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 764  Q
    ||||||||  ||||| ||||||||| ||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  110977 taatgtaacaatgtttattttgaatattaatgtagaaagttttatagtatcagctcatcacaattaatcatgtttgtgactttgaatatggttaagataa 111076  T
Q  765 aatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaatt 836  Q
    |||||||||||||||||||||| |||||||| ||| ||| ||| |||||||||| |||||| ||||||||||    
T  111077 aatcaaatgtttgaattgatcttaaagttgtgattgttaatgagaatataattaatcaaatccaatagaatt 111148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 111635 - 111747
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||    
T  111635 attataattttgaatgttcaccatatatatgtgaag-ttttttctatgcggaaatttatttgactcttaaatgattattaatgtttatcaagtagaaatt 111733  T
Q  149 taatgacattcatt 162  Q
    ||||||||||||||    
T  111734 taatgacattcatt 111747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 112032 - 112125
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||    
T  112032 tttttaacttttctaataatgacatgttccagtatattcctttctaaatatccttccaaacacttttgttagtctgatagtatatgctcgtgag 112125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 427 - 470
Target Start/End: Original strand, 112121 - 112164
Alignment:
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatat 470  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  112121 gtgagattgatctcattgaattaatcggtccttgaactgaatat 112164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 495 - 913
Target Start/End: Complemental strand, 16273708 - 16273290
Alignment:
Q  495 attttaaacaatttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactata 594  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16273708 attttaaacactttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttacaaacataagttattttttatttgtttactata 16273609  T
Q  595 gtgaattcagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgtta 694  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16273608 gtgaatacaacataatattcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgtta 16273509  T
Q  695 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16273508 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 16273409  T
Q  795 taattattattgaaaatataattattcaaattcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagt 894  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16273408 tgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataagagt 16273309  T
Q  895 cgcctttacacttgttcca 913  Q
      |||||||||||||||||    
T  16273308 aacctttacacttgttcca 16273290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 427 - 913
Target Start/End: Complemental strand, 22825080 - 22824598
Alignment:
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatatcaagtttnnnnnnnnnnnnnncctattttaaacaatttcctcgtttgatttataga 526  Q
    |||||| |||||||||||||||||| |||||||||| ||||||||||||||               | |||||||||| |||||||||||||||||||||    
T  22825080 gtgagattgatctcattgaattaatcggtccttgaattgaatatcaagttttaaaaaaaaa-----ccattttaaacactttcctcgtttgatttataga 22824986  T
Q  527 tattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactatagtgaattcagcataatactcaaatgagtttta 626  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22824985 tattattgaaaaaacttaagatactttttagattacaaacataagttattttttatttgtttactatagtgaattcagtataatactcaaatgagtttta 22824886  T
Q  627 agataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgttagtgtagaaattttatagtatcagctcatcaaa 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22824885 agataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcagctcatcaaa 22824786  T
Q  727 atcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataa-ttattcaaat 825  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  22824785 atcagtcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataatttattcaaat 22824686  T
Q  826 tcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagtcgcctttacacttgttcca 913  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  22824685 ccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataagagtcacctttacacttgttcca 22824598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 495 - 913
Target Start/End: Original strand, 28321073 - 28321491
Alignment:
Q  495 attttaaacaatttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactata 594  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  28321073 attttaaacactttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttacaaacataagttattttttatttgtttactaca 28321172  T
Q  595 gtgaattcagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgtta 694  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28321173 gtgaatacaacataatattcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgtta 28321272  T
Q  695 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28321273 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 28321372  T
Q  795 taattattattgaaaatataattattcaaattcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagt 894  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  28321373 tgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataagagt 28321472  T
Q  895 cgcctttacacttgttcca 913  Q
      |||||||||||||||||    
T  28321473 aacctttacacttgttcca 28321491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 28320758 - 28320908
Alignment:
Q  49 attataattttgaaagttcaccatat--atatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaa 146  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28320758 attataattttgaaagttcaccatatatatatgtgaagtttttttctctgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaa 28320857  T
Q  147 tttaatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  28320858 tttaatgacattcattatgtaattattagttaaggagtgtttacgttctta 28320908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 22825330 - 22825183
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22825330 attataattttgaatgttcacaatatatatgtgaag-ttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 22825232  T
Q  149 taatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  22825231 taatgaaattcattatgtaattattagttaaggagtgtttacgttctta 22825183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 666 - 866
Target Start/End: Complemental strand, 16274916 - 16274714
Alignment:
Q  666 taatgtaaacatgttcattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 764  Q
    ||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  16274916 taatgtaacaatgtttattttgaatgttagtgtataaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 16274817  T
Q  765 aatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaatt-ttaggagtcaatttttactcttaactt 863  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||| |||||| ||||||||||  ||||| || ||||||||||||| |||    
T  16274816 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagctt 16274717  T
Q  864 ata 866  Q
    |||    
T  16274716 ata 16274714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 682 - 866
Target Start/End: Complemental strand, 22825971 - 22825785
Alignment:
Q  682 attttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaat 780  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22825971 attttgaatgttagtgtagaaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataaaatcaaatgtttgaat 22825872  T
Q  781 tgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaatt-ttaggagtcaatttttactcttaacttata 866  Q
    |||||| |||||||| ||| ||| ||| |||||||||| |||||| ||||||||||  ||||| || ||||||||||||| ||||||    
T  22825871 tgatcttaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagcttata 22825785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 16273998 - 16273872
Alignment:
Q  71 atatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatttaatgacattcattatgtaatt 170  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16273998 atatatatgtgaagtttttttctctgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatttaatgacattcattatgtaatt 16273899  T
Q  171 attagttgcggagtgtttacgttctta 197  Q
    |||||||  ||||||||||||||||||    
T  16273898 attagttaaggagtgtttacgttctta 16273872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 666 - 836
Target Start/End: Original strand, 28319871 - 28320042
Alignment:
Q  666 taatgtaaacatgttcattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 764  Q
    ||||||||  ||||| ||||||||| ||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  28319871 taatgtaacaatgtttattttgaatattaatgtagaaagttttatagtatcagctcatcacaattaatcatgtttgtgactttgaatatggttaagataa 28319970  T
Q  765 aatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaatt 836  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||| |||||| ||||||||||    
T  28319971 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaatt 28320042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 16274259 - 16274151
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  16274259 attataattttgaatgttcaccatatatatgtgaag-ttttttctatgcggaaatttatttgactcttaaatgattattaatgtttatcaaatagaaatt 16274161  T
Q  149 taatgacatt 158  Q
    ||||||||||    
T  16274160 taatgacatt 16274151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 28320530 - 28320642
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| ||||||||    
T  28320530 attataattttgaatgttcaccatatatatgtgaag-ttttttctatgcgaaaatttatttgactcttaaatgattattaatgtttatcaagtagaaatt 28320628  T
Q  149 taatgacattcatt 162  Q
    ||||||||||||||    
T  28320629 taatgacattcatt 28320642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 16273858 - 16273765
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||    
T  16273858 tttttaacttttctaataatgacatgttccagtatattcctttctaaatatccttccagacacttttgttagtctgatagtatatgctcgtgag 16273765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 22825169 - 22825076
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||||||||||||||||||||||||||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||    
T  22825169 tttttaacttttctaataatgacatgttccagtatattcctttttaaatatcattccagacacttttgttagtctgataatatatgctcgtgag 22825076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 28320923 - 28321016
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||  |||||||||||||||||| ||| |||||| |||||||    
T  28320923 tttttaacttttctaataatgacatgttccagtatattcctttctaaatatcctttcagacacttttgttagtctaatagtatatgctcgtgag 28321016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 427 - 470
Target Start/End: Original strand, 28321012 - 28321055
Alignment:
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatat 470  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  28321012 gtgagattgatctcattgaattaatcggtccttgaactgaatat 28321055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 16274032 - 16274003
Alignment:
Q  49 attataattttgaaagttcaccatatatat 78  Q
    ||||||||||||||||||||||||||||||    
T  16274032 attataattttgaaagttcaccatatatat 16274003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 495 - 913
Target Start/End: Complemental strand, 29996369 - 29995951
Alignment:
Q  495 attttaaacaatttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactata 594  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29996369 attttaaacactttcctcgtttgatttatagatattattgaaaaaacttaagatactttttagtttacaaacataagttattttttatttgtttactata 29996270  T
Q  595 gtgaattcagcataatactcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgtta 694  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29996269 gtgaatacaacataatattcaaatgagttttaagataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgtta 29996170  T
Q  695 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29996169 gtgtagaaattttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttg 29996070  T
Q  795 taattattattgaaaatataattattcaaattcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagt 894  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  29996069 tgattattattgaaaatataattattcaaatccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataataagagt 29995970  T
Q  895 cgcctttacacttgttcca 913  Q
      |||||||||||||||||    
T  29995969 aacctttacacttgttcca 29995951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 666 - 866
Target Start/End: Complemental strand, 29997577 - 29997375
Alignment:
Q  666 taatgtaaacatgttcattttgaatgttagtgtagaaa-ttttatagtatcagctcatcaaaatcaatcatgtttgtgactttgaatgtggttaagataa 764  Q
    ||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  29997577 taatgtaacaatgtttattttgaatgttagtgtataaagttttatagtatcagctcatcataattaatcatgtttgtgactttgaatatggttaagataa 29997478  T
Q  765 aatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaaattcaatagaatt-ttaggagtcaatttttactcttaactt 863  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||| |||||| ||||||||||  ||||| || ||||||||||||| |||    
T  29997477 aatcaaatgtttgaattgatctaaaagttgtgattgttaatgagaatataattaatcaaatccaatagaattaataggactctatttttactcttagctt 29997378  T
Q  864 ata 866  Q
    |||    
T  29997377 ata 29997375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 29996659 - 29996533
Alignment:
Q  71 atatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatttaatgacattcattatgtaatt 170  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29996659 atatatatgtgaagtttttttctctgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatttaatgacattcattatgtaatt 29996560  T
Q  171 attagttgcggagtgtttacgttctta 197  Q
    |||||||  ||||||||||||||||||    
T  29996559 attagttaaggagtgtttacgttctta 29996533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 29996920 - 29996812
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  29996920 attataattttgaatgttcaccatatatatgtgaag-ttttttctatgcggaaatttatttgactcttaaatgattattaatgtttatcaaatagaaatt 29996822  T
Q  149 taatgacatt 158  Q
    ||||||||||    
T  29996821 taatgacatt 29996812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 29996519 - 29996426
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||    
T  29996519 tttttaacttttctaataatgacatgttccagtatattcctttctaaatatccttccagacacttttgttagtctgatagtatatgctcgtgag 29996426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 29996693 - 29996664
Alignment:
Q  49 attataattttgaaagttcaccatatatat 78  Q
    ||||||||||||||||||||||||||||||    
T  29996693 attataattttgaaagttcaccatatatat 29996664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 427 - 913
Target Start/End: Original strand, 40569 - 41051
Alignment:
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatatcaagtttnnnnnnnnnnnnnncctattttaaacaatttcctcgtttgatttataga 526  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||||               | |||||||||| |||||||||||||||||||||    
T  40569 gtgagattgatctcattgaattaattgatccttgaactgaatatcaagttttaaaaaaaaaa----ccattttaaacactttcctcgtttgatttataga 40664  T
Q  527 tattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactatagtgaattcagcataatactcaaatgagtttta 626  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| || |||||||||||||||||||    
T  40665 tattattgaaaaaacttaagatactttttagtttacaaacataagttattttttatttgtttactattatgaattcaacacaatactcaaatgagtttta 40764  T
Q  627 agataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgttagtgtagaaattttatagtatcagctcatcaaa 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  40765 agataaattactcaaaacaactttatattttggggcatataatgtaaacatgtttattttgaatgttagtgtagaaattttatagtatcaactcatcaaa 40864  T
Q  727 atcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtaattatta-ttgaaaatataattattcaaat 825  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  40865 atgaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtgattattatttgaaaatataattattcaaat 40964  T
Q  826 tcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagtcgcctttacacttgttcca 913  Q
     ||||||||||||||||||| ||||| |||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||    
T  40965 ccaatagaattttaggagtcgattttgactcttaacttatacgacatgtttgct-aaaataataagagtcacctttacacttgttcca 41051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 40309 - 40465
Alignment:
Q  49 attataattttgaaagttcaccatat--------atatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaa 140  Q
    ||||||||||||||||||||||||||        |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40309 attataattttgaaagttcaccatatatatatatatatgtgaagtttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaa 40408  T
Q  141 tagaaatttaatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    ||||||||||||| ||||||||| |||||||||| ||  ||||||||||||||||||    
T  40409 tagaaatttaatggcattcattaagtaattattaattaaggagtgtttacgttctta 40465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 40082 - 40192
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||| | |||| |||||||||||| ||||| ||||||||    
T  40082 attataattttgaatgttcaccgtatatatatgaag-ttttttctatgcggaaatttatttgactcttaaataattattaatgtttatcaagtagaaatt 40180  T
Q  149 taatgacattca 160  Q
    ||||||||||||    
T  40181 taatgacattca 40192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 40480 - 40573
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||| |||||||||||||||||||||||  | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  40480 ttttaaacttttctaataatgacatgttcgagtatattcatttctaaatatccttctagacacttttgttagtctgatagtatatgctcgtgag 40573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 427 - 913
Target Start/End: Complemental strand, 158216 - 157734
Alignment:
Q  427 gtgagaatgatctcattgaattaatgggtccttgaactgaatatcaagtttnnnnnnnnnnnnnncctattttaaacaatttcctcgtttgatttataga 526  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||||               | |||||||||| |||||||||||||||||||||    
T  158216 gtgagattgatctcattgaattaattgatccttgaactgaatatcaagttttaaaaaaaaaa----ccattttaaacactttcctcgtttgatttataga 158121  T
Q  527 tattattgaaaaaacttaagatactttttagtttaaaaacataagttattttttatttgtttactatagtgaattcagcataatactcaaatgagtttta 626  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| || |||||||||||||||||||    
T  158120 tattattgaaaaaacttaagatactttttagtttacaaacataagttattttttatttgtttactattatgaattcaacacaatactcaaatgagtttta 158021  T
Q  627 agataaattactcaaaacaactttatattttggggcatataatgtaaacatgttcattttgaatgttagtgtagaaattttatagtatcagctcatcaaa 726  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  158020 agataaattactcaaaacaactttatattttggggcatataatttaaacatgtttattttgaatgttagtgtagaaattttatagtatcaactcatcaaa 157921  T
Q  727 atcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtaattatta-ttgaaaatataattattcaaat 825  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  157920 atgaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtgattattatttgaaaatataattattcaaat 157821  T
Q  826 tcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagtcgcctttacacttgttcca 913  Q
     ||||||||||||||||||| ||||| |||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||    
T  157820 ccaatagaattttaggagtcgattttgactcttaacttatacgacatgtttgct-aaaataataagagtcacctttacacttgttcca 157734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 158470 - 158320
Alignment:
Q  49 attataattttgaaagttcaccatatatat--gtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaa 146  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  158470 attataattttgaaagttcaccatatatatatgtgaagtttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaa 158371  T
Q  147 tttaatgacattcattatgtaattattagttgcggagtgtttacgttctta 197  Q
    ||||||| ||||||||| |||||||||| ||  ||||||||||||||||||    
T  158370 tttaatggcattcattaagtaattattaattaaggagtgtttacgttctta 158320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 158697 - 158587
Alignment:
Q  49 attataattttgaaagttcaccatatatatgtgaaggttttttctatgcggaaatttatttgactttgaaatgattattaatgttcatcaaatagaaatt 148  Q
    |||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||| | |||| |||||||||||| ||||| ||||||||    
T  158697 attataattttgaatgttcaccgtatatatatgaag-ttttttctatgcggaaatttatttgactcttaaataattattaatgtttatcaagtagaaatt 158599  T
Q  149 taatgacattca 160  Q
    ||||||||||||    
T  158598 taatgacattca 158587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 158305 - 158212
Alignment:
Q  238 tttttaacttttctaataatgacatgtttcaatatattcctttctaaatatccttctagacacttttgttagtctgataatatatgttcgtgag 331  Q
    |||| |||||||||||||||||||||||  | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  158305 ttttaaacttttctaataatgacatgttcgagtatattcatttctaaatatccttctagacacttttgttagtctgatagtatatgctcgtgag 158212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 724 - 913
Target Start/End: Complemental strand, 31973384 - 31973195
Alignment:
Q  724 aaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtaattattattgaaaatataattattcaa 823  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31973384 aaaatcaatcatgtttgtgactttgaatgtggttaagataaaatcaaatgtttgaattgatctaaaagttgtgattattattgaaaatataattattcaa 31973285  T
Q  824 attcaatagaattttaggagtcaatttttactcttaacttatatgacatgtttactaaaaataataagagtcgcctttacacttgttcca 913  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||    
T  31973284 atccaatagaattttaggagtcaatttttactcttaacttatacgacatgtttgctaaaaataattagagtcacctttacacttgttcca 31973195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 734 - 795
Target Start/End: Complemental strand, 7968211 - 7968149
Alignment:
Q  734 atgtttgtgactttgaatgtggttaagataaaa-tcaaatgtttgaattgatctaaaagttgt 795  Q
    |||| ||||||||| |||||||||||||||||| ||||||| ||  |||||||||||||||||    
T  7968211 atgtgtgtgactttaaatgtggttaagataaaagtcaaatgcttctattgatctaaaagttgt 7968149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5929 times since January 2019
Visitors: 7688