View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0025-Insertion-4 (Length: 614)
Name: NF0025-Insertion-4
Description: NF0025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0025-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 7 - 614
Target Start/End: Original strand, 30526614 - 30527220
Alignment:
| Q |
7 |
aaatctgttgtagactaggctagctagtctttaagaaaatgcttgtcaatttcgataccatttgtgtcaaagcaatatcttagggagtagattttcacaa |
106 |
Q |
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| T |
30526614 |
aaatctgttgtagactaggctagctagtctttaagaaaatgcttgtcaatttcggtaccatttgtgtcaaagcaatatcttagggagtagattttcacaa |
30526713 |
T |
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| Q |
107 |
tccccacaaaacaagcatcaatatatctaagactatgtttgaatcgatgaaattaagcggaatcaagttgtatagagttatattcatttgtttggaattc |
206 |
Q |
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| T |
30526714 |
tccccacaaaacaagcataaatatatctaagactatgtttgaatcgatgaaattaagcgaaatcaagttgtatagagttatattcatttgtttggaattc |
30526813 |
T |
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| Q |
207 |
tataaattaatgaagtgaaatagaatataatggaattcattgcattcatatcatcctctcgtattatttttcattccccaatttgataaatagagtatac |
306 |
Q |
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| T |
30526814 |
tataaattaatgaagtgaaatgaaatataatgaaattcattgcgttcatatcatcctctcatattatttttcattccccaaattgataaatagagtatac |
30526913 |
T |
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| Q |
307 |
aatagaaccaaatatattgattaaataataactatttgatcatgtatcatttctttttctctttaatcatatattcttcatctgatccagatttcttctt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| |
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| T |
30526914 |
aatagaaccaaatatattgattaaataataactatttgatcatgtatcatttctttttctctttagtcatatatacttcatctgatgcagatttattctt |
30527013 |
T |
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| Q |
407 |
ctccttgtatggatccctctcccgtctttgcttgttatgttttgttacttctaattataaaatgaagaatgnnnnnnnnnnnntcaaactgatcgtgttt |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||| |
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| T |
30527014 |
ctccttgtatggatccctctcccgtctttgcttgttatgttttgttacttctaattataaaatgaagaaag--aaaaaaaaaatcaaacttgttgtgttt |
30527111 |
T |
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| Q |
507 |
catcattttttatttcttctcctgtaatcattaaaacccttttatttatggtttgccttgagc-tttcctttcatctctctcgactcagtttagttccct |
605 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||||||| |
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| T |
30527112 |
catcattctctatttcttctcctgtaatcattaaaacccttttatttatggtttgtcttgagcttttcctttcttcactctcaactcagtttagttccct |
30527211 |
T |
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| Q |
606 |
ttttatctt |
614 |
Q |
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||||||||| |
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| T |
30527212 |
ttttatctt |
30527220 |
T |
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