View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0025-Insertion-5 (Length: 560)

Name: NF0025-Insertion-5
Description: NF0025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0025-Insertion-5
NF0025-Insertion-5
[»] chr1 (22 HSPs)
chr1 (8-560)||(45935295-45935847)
chr1 (81-128)||(25715343-25715390)
chr1 (78-128)||(28090711-28090761)
chr1 (78-128)||(37462893-37462943)
chr1 (78-128)||(41560444-41560494)
chr1 (78-129)||(10200322-10200373)
chr1 (78-129)||(39140730-39140781)
chr1 (81-128)||(52292257-52292304)
chr1 (78-128)||(4590549-4590599)
chr1 (78-128)||(5338928-5338978)
chr1 (90-128)||(7210944-7210982)
chr1 (78-128)||(8796424-8796474)
chr1 (78-128)||(21769728-21769778)
chr1 (78-128)||(26113456-26113506)
chr1 (78-128)||(32404543-32404593)
chr1 (78-128)||(34444571-34444621)
chr1 (78-128)||(44751699-44751749)
chr1 (78-128)||(44941793-44941843)
chr1 (78-128)||(52561606-52561656)
chr1 (83-128)||(26299288-26299333)
chr1 (78-127)||(28511819-28511868)
chr1 (80-128)||(7124358-7124406)
[»] chr3 (18 HSPs)
chr3 (254-558)||(15817624-15817926)
chr3 (8-69)||(15817524-15817585)
chr3 (78-128)||(24541349-24541399)
chr3 (78-128)||(24778626-24778676)
chr3 (481-550)||(43953280-43953349)
chr3 (80-128)||(40672384-40672432)
chr3 (78-128)||(15296122-15296172)
chr3 (78-128)||(40116355-40116405)
chr3 (78-128)||(40991646-40991696)
chr3 (78-128)||(41529976-41530026)
chr3 (78-128)||(45374494-45374544)
chr3 (78-124)||(46148243-46148289)
chr3 (78-128)||(48508450-48508500)
chr3 (78-128)||(48734164-48734214)
chr3 (78-128)||(52927865-52927915)
chr3 (78-127)||(29601107-29601156)
chr3 (80-128)||(19676098-19676146)
chr3 (84-128)||(38060935-38060979)
[»] chr5 (11 HSPs)
chr5 (78-128)||(14667986-14668036)
chr5 (78-128)||(27386555-27386605)
chr5 (78-135)||(32442135-32442192)
chr5 (76-128)||(41894286-41894338)
chr5 (90-128)||(9234113-9234151)
chr5 (78-128)||(20456988-20457038)
chr5 (78-128)||(29922499-29922549)
chr5 (78-128)||(38132551-38132601)
chr5 (78-128)||(42272692-42272742)
chr5 (78-127)||(418052-418101)
chr5 (298-331)||(8860936-8860969)
[»] chr7 (11 HSPs)
chr7 (76-128)||(9210721-9210773)
chr7 (78-128)||(28708596-28708646)
chr7 (78-125)||(24376043-24376090)
chr7 (78-128)||(1011261-1011311)
chr7 (78-128)||(2885739-2885789)
chr7 (78-128)||(28627950-28628000)
chr7 (78-128)||(40979945-40979995)
chr7 (82-128)||(42187660-42187706)
chr7 (78-128)||(45601691-45601741)
chr7 (78-128)||(47852302-47852352)
chr7 (78-123)||(40391845-40391890)
[»] chr8 (8 HSPs)
chr8 (78-128)||(490550-490600)
chr8 (78-128)||(1928604-1928654)
chr8 (78-128)||(45419450-45419500)
chr8 (80-128)||(45041333-45041381)
chr8 (78-129)||(30689950-30690001)
chr8 (93-127)||(1549409-1549443)
chr8 (78-128)||(23996752-23996802)
chr8 (78-128)||(35914618-35914668)
[»] chr6 (3 HSPs)
chr6 (78-128)||(34522-34572)
chr6 (78-128)||(30031471-30031521)
chr6 (78-128)||(12890790-12890840)
[»] chr4 (10 HSPs)
chr4 (78-128)||(15661889-15661939)
chr4 (78-128)||(26024867-26024917)
chr4 (78-128)||(35690486-35690536)
chr4 (78-125)||(28467653-28467700)
chr4 (89-128)||(47265212-47265251)
chr4 (78-128)||(48174110-48174160)
chr4 (78-123)||(51176789-51176834)
chr4 (84-128)||(30634123-30634167)
chr4 (80-128)||(55007963-55008011)
chr4 (92-128)||(56375519-56375555)
[»] chr2 (14 HSPs)
chr2 (78-128)||(9531617-9531667)
chr2 (78-129)||(887081-887132)
chr2 (78-125)||(3720435-3720482)
chr2 (81-128)||(10516766-10516813)
chr2 (78-128)||(11412925-11412975)
chr2 (78-128)||(12520079-12520129)
chr2 (78-128)||(12882062-12882112)
chr2 (78-128)||(18959126-18959176)
chr2 (78-128)||(25384684-25384734)
chr2 (78-128)||(33504439-33504489)
chr2 (82-128)||(43573147-43573193)
chr2 (78-127)||(39709219-39709268)
chr2 (76-128)||(440929-440981)
chr2 (92-128)||(7431906-7431942)


Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Original strand, 45935295 - 45935847
Alignment:
Q  8 ttcttgccttcatgccctctggatgggccattattctggtaagctaaaattcctgcatcatataactaacaacattatggagtaatttgatccatgtaac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45935295 ttcttgccttcatgccctctggatgggccattattctggtaagctaaaattcctgcatcatatagctaacaacattatggagtaatttgatccatgtaac 45935394  T
Q  108 ggacctcacttagtgggataatcttggtcnnnnnnnnnnnnnnnnnacatagccaacaacaattttttctcattttgctattgtatgatatgtattagga 207  Q
    |||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45935395 ggacctcacttagtgggataatcttggtcgttgttgttgttgttgtacatagccaacaacaattttttctcattttgctattgtatgatatgtattagga 45935494  T
Q  208 agattgaagaagattttatagaggcttagatatatttttaagtctttaaatatgcttcattttgttttggtctctgcaaaagaagttgtggtttaaatat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45935495 agattgaagaagattttatagaggcttagatatatttttaagtctttaaatatgcttcattttgttttggtctctgcaaaagaagttgtggtttaaatat 45935594  T
Q  308 gattttaattcctgaaattataacannnnnnnctttctcttttgcaatcaagattgcacaaacatgcaggggactcttgaagtgggctaaactatgggct 407  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45935595 gattttaattcctgaaattataacatttttttctttctcttttgcaatcaagattgcacaaacatgcaggggactcttgaagtgggctaaactatgggct 45935694  T
Q  408 tcagtgagagaactttcaagagcatatgaatatgtaatggggttgataattttcatgccagcagcagttttatcatggttcccatttgtgtcggagttcc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45935695 tcagtgagagaactttcaagagcatatgaatatgtaatggggttgataattttcatgccagcagcagttttatcatggttcccatttgtgtcggagttcc 45935794  T
Q  508 aaacccggttgctattcaatcaagcatgtagtagaggacttcagatttcaagg 560  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45935795 aaacccggttgctattcaatcaagcatgtagtagaggacttcagatttcaagg 45935847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 25715390 - 25715343
Alignment:
Q  81 attatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  25715390 attatggcgtaatttgatccatgtagccgacctcacttagtgggataa 25715343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 28090761 - 28090711
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  28090761 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 28090711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 37462943 - 37462893
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  37462943 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 37462893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 41560444 - 41560494
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  41560444 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 41560494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 10200373 - 10200322
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataat 129  Q
    ||||| |||| ||||||||||||||||| | ||||||||||| |||||||||    
T  10200373 aacatcatggtgtaatttgatccatgtagccgacctcacttaatgggataat 10200322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 39140730 - 39140781
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataat 129  Q
    |||||||||| |||||||||| |||||| | |||| ||||||||||||||||    
T  39140730 aacattatggcgtaatttgattcatgtagccgaccccacttagtgggataat 39140781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 52292257 - 52292304
Alignment:
Q  81 attatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||| |||||||||||||||||||||  ||| |||||||||||||||    
T  52292257 attattgagtaatttgatccatgtaaccaaccccacttagtgggataa 52292304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 4590599 - 4590549
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  4590599 aacaatatggtgtaatttgatccatgtagccgaccccacttagtgggataa 4590549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 5338928 - 5338978
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| |  ||||||||||||| |||||    
T  5338928 aacattatggcgtaatttgatccatgtagccaacctcacttagtgagataa 5338978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 7210982 - 7210944
Alignment:
Q  90 taatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  7210982 taatttgatccatgtaaccgaccccacttagtgggataa 7210944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 8796424 - 8796474
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||| ||||||||| | |||| |||||||||||||||    
T  8796424 aacattatggcgtaatttaatccatgtagccgaccccacttagtgggataa 8796474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 21769778 - 21769728
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||| |||||    
T  21769778 aacattatggcgtaatttgatccatgtagccgaccccacttagtgtgataa 21769728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 26113506 - 26113456
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||||||||  |||||||||||||||| | || |||||||||||||||||    
T  26113506 aacattatggcttaatttgatccatgtagccgagctcacttagtgggataa 26113456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 32404593 - 32404543
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||| |||| ||||||||||||||||| | |||| |||||||||||||||    
T  32404593 aacataatggcgtaatttgatccatgtagccgaccccacttagtgggataa 32404543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 34444571 - 34444621
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||| ||||| | |||| |||||||||||||||    
T  34444571 aacattatggtgtaatttgatctatgtagccgaccccacttagtgggataa 34444621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 44751699 - 44751749
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| || |||||||||||||| | ||||||||||||||||||||    
T  44751699 aacactatggcgtcatttgatccatgtagccgacctcacttagtgggataa 44751749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 44941843 - 44941793
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  44941843 aacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 44941793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 52561656 - 52561606
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| | ||||||||||||||| | |||| |||||||||||||||    
T  52561656 aacattatggcgaaatttgatccatgtagccgaccccacttagtgggataa 52561606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 26299288 - 26299333
Alignment:
Q  83 tatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  26299288 tatggcgtaatttgatccatgtagccgaccccacttagtgggataa 26299333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 28511868 - 28511819
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggata 127  Q
    |||||||||| ||||||||||| ||||| | |||| ||||||||||||||    
T  28511868 aacattatggcgtaatttgatcaatgtagccgaccccacttagtgggata 28511819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 7124358 - 7124406
Alignment:
Q  80 cattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||| ||  ||||||||||||| | ||||||||||||||||||||    
T  7124358 cattatggtgtcgtttgatccatgtagctgacctcacttagtgggataa 7124406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 254 - 558
Target Start/End: Original strand, 15817624 - 15817926
Alignment:
Q  254 taaatatgcttcattttgttttggtctctgcaaaagaagttgtggtttaaatatgattttaattcctgaaattataacannnnnnnctttctcttttgca 353  Q
    |||||||||||| ||||||||| |||||||||||| |||||  |||||||||||||||||||| |||||||||||||||       ||  ||||||||||    
T  15817624 taaatatgcttctttttgttttagtctctgcaaaaaaagtttcggtttaaatatgattttaatccctgaaattataacatttttttct--ctcttttgca 15817721  T
Q  354 atcaagattgcacaaacatgcaggggactcttgaagtgggctaaactatgggcttcagtgagagaactttcaagagcatatgaatatgtaatggggttga 453  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15817722 atcaagattgcacaaacatgtaggggactcttgaagtgggcgaaactatgggcttcagtgagagaactttcaagagcatatgaatatgtaatgggattga 15817821  T
Q  454 taattttcatgccagcagcagttttatcatggttcccatttgtgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttcagat 553  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  15817822 taattttcatgccaacagcagttttatcgtggttcccatttgtgtcggagttccaaacgcggttgctattcaatcaagcatttagtagaggacttcagat 15817921  T
Q  554 ttcaa 558  Q
    |||||    
T  15817922 ttcaa 15817926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 15817524 - 15817585
Alignment:
Q  8 ttcttgccttcatgccctctggatgggccattattctggtaagctaaaattcctgcatcata 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15817524 ttcttgccttcatgccctctggatgggccattattctggtaagctaaatttcctgcatcata 15817585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 24541399 - 24541349
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  24541399 aacattatggcgtaatttgatccatgtacccgaccccacttagtgggataa 24541349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 24778676 - 24778626
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  24778676 aacattatggtgtaatttgatccatgtagccgaccccacttagtgggataa 24778626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 550
Target Start/End: Complemental strand, 43953349 - 43953280
Alignment:
Q  481 catggttcccatttgtgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttca 550  Q
    |||||||||||||||| || || ||||||||| || |||||||||| |||||||  || |||||||||||    
T  43953349 catggttcccatttgtttcagaattccaaaccaggctgctattcaaccaagcattcagcagaggacttca 43953280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 40672432 - 40672384
Alignment:
Q  80 cattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||||||  |||||||||||||||| | ||||||||||||||||||||    
T  40672432 cattatggcataatttgatccatgtagctgacctcacttagtgggataa 40672384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 15296122 - 15296172
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||  | |||| |||||||||||||||    
T  15296122 aacattatggtgtaatttgatccatgtggccgaccccacttagtgggataa 15296172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 40116405 - 40116355
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||| ||| | |||||| |||||||||||||    
T  40116405 aacattatggcgtaatttgatccacgtagccgacctcgcttagtgggataa 40116355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 40991646 - 40991696
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||| |||||    
T  40991646 aacattatggtgtaatttgatccatgtagctgaccccacttagtgagataa 40991696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 41529976 - 41530026
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  41529976 aacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 41530026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 45374544 - 45374494
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||| ||||||||| | |||| |||||||||||||||    
T  45374544 aacattatggcgtaatttaatccatgtagctgaccccacttagtgggataa 45374494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 46148243 - 46148289
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtggg 124  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||    
T  46148243 aacattatggcgtaatttgatccatgtagccgaccccacttagtggg 46148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 48508450 - 48508500
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  48508450 aacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 48508500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 48734214 - 48734164
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| |||| |||||||||||| | |||| |||||||||||||||    
T  48734214 aacattatggcgtaagttgatccatgtagctgaccccacttagtgggataa 48734164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 52927915 - 52927865
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||||||||  |||||||||||||||| | |||| |||||||||||||||    
T  52927915 aacattatggcataatttgatccatgtagccgaccccacttagtgggataa 52927865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 29601107 - 29601156
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggata 127  Q
    |||||||||  ||||||||||||||||| | |||| ||||||||||||||    
T  29601107 aacattatgatgtaatttgatccatgtagctgaccccacttagtgggata 29601156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 19676146 - 19676098
Alignment:
Q  80 cattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||| || |||||||||||||| | |||| |||||||||||||||    
T  19676146 cattatggcgtgatttgatccatgtagctgaccccacttagtgggataa 19676098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 38060935 - 38060979
Alignment:
Q  84 atggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||||||||||||||| | |||| |||||||||||||||    
T  38060935 atggcgtaatttgatccatgtagccgaccccacttagtgggataa 38060979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 14667986 - 14668036
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||||    
T  14667986 aacattatggtgtaatttgatccatgtaaccgaccccacttagtgggataa 14668036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 27386555 - 27386605
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  27386555 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 27386605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 32442192 - 32442135
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataatcttggt 135  Q
    |||||||||| ||||||||||||||||| | |||  ||||||||||||||| ||||||    
T  32442192 aacattatggcgtaatttgatccatgtagccgactccacttagtgggataagcttggt 32442135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 41894286 - 41894338
Alignment:
Q  76 acaacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||||| ||||||||||||||||| |  ||| |||||||||||||||    
T  41894286 acaacattatggtgtaatttgatccatgtagccaaccccacttagtgggataa 41894338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 9234113 - 9234151
Alignment:
Q  90 taatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  9234113 taatttgatccatgtaaccgaccccacttagtgggataa 9234151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 20456988 - 20457038
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| || |||||||||||||| | |||| |||||||||||||||    
T  20456988 aacattatggcgtcatttgatccatgtagccgaccccacttagtgggataa 20457038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 29922499 - 29922549
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| |  ||||||||| |||||||||    
T  29922499 aacattatggcgtaatttgatccatgtagccaacctcacttggtgggataa 29922549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 38132551 - 38132601
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||  | |||| |||||||||||||||    
T  38132551 aacattatggcgtaatttgatccatgtggccgaccccacttagtgggataa 38132601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 42272692 - 42272742
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| || |||||||||||||| | |||| |||||||||||||||    
T  42272692 aacattatggcgtcatttgatccatgtagctgaccccacttagtgggataa 42272742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 418101 - 418052
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggata 127  Q
    |||||||||| ||||||||||||||||| | |||| ||||| ||||||||    
T  418101 aacattatggcgtaatttgatccatgtagccgaccccacttggtgggata 418052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 8860936 - 8860969
Alignment:
Q  298 gtttaaatatgattttaattcctgaaattataac 331  Q
    ||||||||||||||||||||| ||||||||||||    
T  8860936 gtttaaatatgattttaattcttgaaattataac 8860969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 9210773 - 9210721
Alignment:
Q  76 acaacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  9210773 acaacattatggcgtaatttgatccatgtagctgaccccacttagtgggataa 9210721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 28708596 - 28708646
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  28708596 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 28708646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 24376090 - 24376043
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtggga 125  Q
    |||||||||| ||||||||||||||||| | |||||| ||||||||||    
T  24376090 aacattatggcgtaatttgatccatgtagccgacctcgcttagtggga 24376043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 1011261 - 1011311
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||| ||||| | |||| |||||||||||||||    
T  1011261 aacattatggtgtaatttgatctatgtagccgaccccacttagtgggataa 1011311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 2885789 - 2885739
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  2885789 aacactatggtgtaatttgatccatgtagccgaccccacttagtgggataa 2885739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 28628000 - 28627950
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||  |||||||||||||||    
T  28628000 aacattatggcgtaatttgatccatgtagccgactccacttagtgggataa 28627950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 40979995 - 40979945
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  40979995 aacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 40979945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 42187660 - 42187706
Alignment:
Q  82 ttatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||| ||||||||||||||||| | |||| |||||||||||||||    
T  42187660 ttatggcgtaatttgatccatgtagccgaccccacttagtgggataa 42187706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 45601691 - 45601741
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | || |||||||||||||||||    
T  45601691 aacactatggtgtaatttgatccatgtagctgaactcacttagtgggataa 45601741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 47852302 - 47852352
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| ||||||| |||||||    
T  47852302 aacattatggcgtaatttgatccatgtagccgaccccacttagggggataa 47852352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 40391890 - 40391845
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgg 123  Q
    |||||||||| |||||||||||||| |||| |||| ||||||||||    
T  40391890 aacattatggcgtaatttgatccatctaaccgaccccacttagtgg 40391845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 490550 - 490600
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  490550 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 490600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 1928654 - 1928604
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  1928654 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 1928604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 45419450 - 45419500
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  45419450 aacattatggtgtaatttgatccatgtagccgaccccacttagtgggataa 45419500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 45041381 - 45041333
Alignment:
Q  80 cattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  45041381 cattatggcgtaatttgatccatgtagctgaccccacttagtgggataa 45041333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 30689950 - 30690001
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataat 129  Q
    |||||||||  ||||||||||||||||| | |||| ||||||||||||||||    
T  30689950 aacattatgacgtaatttgatccatgtagccgaccccacttagtgggataat 30690001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 1549443 - 1549409
Alignment:
Q  93 tttgatccatgtaacggacctcacttagtgggata 127  Q
    |||||||||||||||||||| ||||||||||||||    
T  1549443 tttgatccatgtaacggaccccacttagtgggata 1549409  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 23996802 - 23996752
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||||| || |||||||||||||| |||| |||||| |||||||||||||    
T  23996802 aacattacggcgtaatttgatccatttaactgacctcccttagtgggataa 23996752  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 35914668 - 35914618
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||| |||||    
T  35914668 aacattatggcgtaatttgatccatgtagctgaccccacttagtgagataa 35914618  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 34572 - 34522
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  34572 aacattatggcgtaatttgatccatgtagctgaccccacttagtgggataa 34522  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 30031471 - 30031521
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | ||||||||||||||||||||    
T  30031471 aacactatggcgtaatttgatccatgtagccgacctcacttagtgggataa 30031521  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 12890790 - 12890840
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  12890790 aacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 12890840  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 15661939 - 15661889
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  15661939 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 15661889  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 26024917 - 26024867
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||| ||||||||| | ||||||||||||||||||||    
T  26024917 aacattatggtgtaattttatccatgtagccgacctcacttagtgggataa 26024867  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 35690486 - 35690536
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  35690486 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 35690536  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 28467653 - 28467700
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtggga 125  Q
    |||||||||| ||||||||||||||||| |||||| | ||||||||||    
T  28467653 aacattatggcgtaatttgatccatgtagcggaccccgcttagtggga 28467700  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 47265251 - 47265212
Alignment:
Q  89 gtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  47265251 gtaatttgatccatgtagccgacctcacttagtgggataa 47265212  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 48174160 - 48174110
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| || |||||||||||||| | |||| |||||||||||||||    
T  48174160 aacattatggcgtcatttgatccatgtagcagaccccacttagtgggataa 48174110  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 51176789 - 51176834
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgg 123  Q
    ||||||||||  |||||||||||||||| |||||| ||||||||||    
T  51176789 aacattatggcataatttgatccatgtagcggaccacacttagtgg 51176834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 30634167 - 30634123
Alignment:
Q  84 atggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||||||||||||||| | |||| |||||||||||||||    
T  30634167 atggcgtaatttgatccatgtagccgaccccacttagtgggataa 30634123  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 55007963 - 55008011
Alignment:
Q  80 cattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||  ||||||||||||||||| | |||| |||||||||||||||    
T  55007963 cattatgacgtaatttgatccatgtagccgaccccacttagtgggataa 55008011  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 56375519 - 56375555
Alignment:
Q  92 atttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||||||| | ||||||||||||||||||||    
T  56375519 atttgatccatgtagccgacctcacttagtgggataa 56375555  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 9531667 - 9531617
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | |||| |||||||||||||||    
T  9531667 aacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 9531617  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 887132 - 887081
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataat 129  Q
    |||||||||| ||||||||||||||||| | |||| ||||| ||||||||||    
T  887132 aacattatggcgtaatttgatccatgtagctgaccccacttggtgggataat 887081  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 3720482 - 3720435
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtggga 125  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||||||    
T  3720482 aacattatggtgtaatttgatccatgtagccgaccccacttagtggga 3720435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 10516813 - 10516766
Alignment:
Q  81 attatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||||| ||||||||||||||||| | || |||||||||||||||||    
T  10516813 attatggcgtaatttgatccatgtagctgatctcacttagtgggataa 10516766  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 11412925 - 11412975
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| ||||||||||||||||| | || |||||||||| ||||||    
T  11412925 aacattatggtgtaatttgatccatgtagccgaactcacttagtaggataa 11412975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 12520129 - 12520079
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  12520129 aacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 12520079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 12882112 - 12882062
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||| ||| ||||||||||||||||| |  |||||||||||||||||||    
T  12882112 aacattttggcgtaatttgatccatgtagcctacctcacttagtgggataa 12882062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 18959126 - 18959176
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    ||||||||||  |||||||||||||||| | |||| |||||||||||||||    
T  18959126 aacattatggcataatttgatccatgtagctgaccccacttagtgggataa 18959176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 25384684 - 25384734
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||| ||||| ||||||||||||||||| |  |||||||||||||||||||    
T  25384684 aacactatggcgtaatttgatccatgtagccaacctcacttagtgggataa 25384734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 33504439 - 33504489
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||| |||||||||||||| || | |||| |||||||||||||||    
T  33504439 aacattatggcgtaatttgatccatctagccgaccccacttagtgggataa 33504489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 43573193 - 43573147
Alignment:
Q  82 ttatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||| ||||||||||||||||| | |||| |||||||||||||||    
T  43573193 ttatggcgtaatttgatccatgtagccgaccccacttagtgggataa 43573147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 39709268 - 39709219
Alignment:
Q  78 aacattatggagtaatttgatccatgtaacggacctcacttagtgggata 127  Q
    |||| ||||| ||||||||||||||||| | |||| ||||||||||||||    
T  39709268 aacactatggcgtaatttgatccatgtagccgaccccacttagtgggata 39709219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 440929 - 440981
Alignment:
Q  76 acaacattatggagtaatttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||||| ||||||||||||||||| | |||  ||||||| |||||||    
T  440929 acaacattatggcgtaatttgatccatgtagctgactccacttagagggataa 440981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 7431942 - 7431906
Alignment:
Q  92 atttgatccatgtaacggacctcacttagtgggataa 128  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  7431942 atttgatccatgcaaccgacctcacttagtgggataa 7431906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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