View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0025-Insertion-7 (Length: 599)

Name: NF0025-Insertion-7
Description: NF0025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0025-Insertion-7
NF0025-Insertion-7
[»] chr2 (3 HSPs)
chr2 (8-599)||(42693582-42694173)
chr2 (473-529)||(42688092-42688148)
chr2 (61-136)||(42687713-42687788)
[»] chr5 (2 HSPs)
chr5 (55-334)||(9603392-9603671)
chr5 (474-526)||(9604084-9604136)
[»] chr8 (16 HSPs)
chr8 (20-352)||(6264133-6264462)
chr8 (61-331)||(6457758-6458028)
chr8 (22-139)||(6275399-6275516)
chr8 (458-538)||(6457559-6457639)
chr8 (20-107)||(6322298-6322385)
chr8 (61-256)||(6451743-6451938)
chr8 (29-139)||(6332850-6332960)
chr8 (468-538)||(6451370-6451440)
chr8 (473-529)||(6263797-6263853)
chr8 (473-530)||(6289527-6289584)
chr8 (473-530)||(6321909-6321966)
chr8 (473-530)||(6332483-6332540)
chr8 (475-532)||(6391482-6391539)
chr8 (474-530)||(6275040-6275096)
chr8 (474-530)||(6363675-6363731)
chr8 (474-530)||(6424566-6424622)
[»] chr3 (1 HSPs)
chr3 (473-530)||(36744660-36744717)
[»] chr7 (1 HSPs)
chr7 (474-529)||(46710884-46710939)


Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 8 - 599
Target Start/End: Complemental strand, 42694173 - 42693582
Alignment:
Q  8 tcattgttattaaacagatcctaaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42694173 tcattgttattaaacagatcctaaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttctt 42694074  T
Q  108 acttatggactgaaagcagtatctcaaaatgtggtccctgcattagagtctgtaatctttgatttaaatttcacaccaaatgagtttgatagctttgatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42694073 acttatggactgaaagcagtatctcaaaatgtggtccctgcattagagtctgtaatctttgatttaaatttcacaccaaatgagtttgatagctttgatg 42693974  T
Q  208 aagttcatggattgtatgagggtggaattaagctgccaacagatgtacttagcaagataagtccgttacctgtgctcaaagaaatctttcgaaccgatgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42693973 aagttcatggattgtatgagggtggaattaagctgccaacagatgtacttagcaagataagtccgttacctgttctcaaagaaatctttcgaaccgatgg 42693874  T
Q  308 tgaacagttcctcaagtatccaccacctaaagtacttcaaggtatttcattgtcataccttaaaagtacttttaactaaaatggacctgttaagtgcttt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42693873 tgaacagttcctcaagtatccaccacctaaagtacttcaaggtatttcattgtcataccttaaaagtacttttagctaaaatggacctgttaagtgcttt 42693774  T
Q  408 tggatctcaagaattaatcttatttgacagtcgctattctatattattaattgaacagtaagcaggtctgcatggatgactgatgaagaatttgcaagag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42693773 tggatctcaagaattaatcttatttgacagtcgctattctatattattaattgaacagtaagcaggtctgcatggatgactgatgaagaatttgcaagag 42693674  T
Q  508 aaatgctagctggagtaaatccaaatgtgatctgttgccttcaggtaagctcaagagttttcaataaaaactactcaaaccaaaagtttgga 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42693673 aaatgctagctggagtaaatccaaatgtgatctgttgccttcaggtaagctcaagagttttcaataaaaactactcaaaccaaaagtttgga 42693582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 42688092 - 42688148
Alignment:
Q  473 gtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcc 529  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||    
T  42688092 gtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcc 42688148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 42687713 - 42687788
Alignment:
Q  61 ttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaaagcagtatctcaaaa 136  Q
    ||||||||||||||  ||||||||||||||| || ||||| ||||| || |||||| | ||| | |||||||||||    
T  42687713 ttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatctgtatctcaaaa 42687788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 55 - 334
Target Start/End: Original strand, 9603392 - 9603671
Alignment:
Q  55 tgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaaagcagtatctcaaaatgtggtccctgcattaga 154  Q
    ||||| ||||||||||||||  |||||| |||||||| ||||| || || ||||| |||||| | ||| || | |||||| ||||| | |||   ||  |    
T  9603392 tgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaatcattgtctcaagatgtgttacctttgtttaa 9603491  T
Q  155 gtctgtaatctttgatttaaatttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgta 254  Q
     ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| | ||  || | ||| ||||||||| | || || ||| || ||    
T  9603492 atctgtaatctttgatttgaatttcactccaaatgagtttgatagcttcgatgaagtgcgtgacttatttgaaggtggaattgaacttcctacacatata 9603591  T
Q  255 cttagcaagataagtccgttacctgtgctcaaagaaatctttcgaaccgatggtgaacagttcctcaagtatccaccacc 334  Q
     | ||||| || ||||| ||||| || ||||| ||||| || || || |||||||||||  ||||||||| |||||||||    
T  9603592 ttgagcaaaatcagtcccttaccagtactcaaggaaattttccgcactgatggtgaacaagtcctcaagtttccaccacc 9603671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 9604084 - 9604136
Alignment:
Q  474 tctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaa 526  Q
    |||||||||||||||||||||||||||| |||||| ||| | |||||||||||    
T  9604084 tctgcatggatgactgatgaagaatttggaagagagatggttgctggagtaaa 9604136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 6264462 - 6264133
Alignment:
Q  20 aacagatcctaaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactg 119  Q
    |||||||||||| |||||||| |||||   |  ||||||| ||||||||||||||||||| || ||||||||||| ||||| ||||||  |||||||||     
T  6264462 aacagatcctaacagtgagagcaggagctctagtgtgtatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggactt 6264363  T
Q  120 aaagcagtatctcaaaatgtggtccctgcattagagtctgtaatctttgatttaaatttcacaccaaatgagtttgatagctttgatgaagttcatggat 219  Q
    ||  | || |||||| ||||  | ||     || | ||||||   |||||    || |||||||| ||||| ||||||||||||||||| || | ||       
T  6264362 aagtctgtttctcaagatgtaattccattgatacaatctgta---tttgacacgaacttcacaccgaatgaatttgatagctttgatgatgtgcttgatc 6264266  T
Q  220 tgtatgagggtggaattaagctgccaacagatgtacttagcaagataagtccgttacctgtgctcaaagaaatctttcgaaccgatggtgaacagttcct 319  Q
    | ||||| || ||||||||||| ||||||||| |||||||| | || ||||| ||||| ||| |   |||||||||| |||| ||||||||||| |||||    
T  6264265 tatatgaaggaggaattaagctaccaacagatatacttagccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcct 6264166  T
Q  320 caagtatccaccacctaaagtacttcaaggtat 352  Q
    ||||| |||  ||||||||||| ||||||||||    
T  6264165 caagtttcctacacctaaagtaattcaaggtat 6264133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 61 - 331
Target Start/End: Complemental strand, 6458028 - 6457758
Alignment:
Q  61 ttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaaagcagtatctcaaaatgtggtccctgcattagagtctgt 160  Q
    ||||||||||||||  ||||||||||||||| |||||||| || ||||  |||||| | ||| || | |||||||||||  | ||    ||  | |||||    
T  6458028 ttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaatcactgtctcaaaatgtcataccattgtttaaatctgt 6457929  T
Q  161 aatctttgatttaaatttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtacttagc 260  Q
     || |||||  | |||||||||||||||||||| |||||||| |||||||| | |||| | |  || ||||| |||||||| || |||||| |||||||     
T  6457928 gatttttgacctcaatttcacaccaaatgagttcgatagcttcgatgaagtacgtggacttttcgaaggtgggattaagcttcctacagatatacttagt 6457829  T
Q  261 aagataagtccgttacctgtgctcaaagaaatctttcgaaccgatggtgaacagttcctcaagtatccacc 331  Q
     | || ||||| ||||| |  || || ||||||||||| || || ||||||||  ||||||||| ||||||    
T  6457828 caaattagtcccttaccggcccttaaggaaatctttcgcactgacggtgaacaagtcctcaagtttccacc 6457758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 6275516 - 6275399
Alignment:
Q  22 cagatcctaaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaa 121  Q
    |||||||||||||||||||  |||| || | | | |||||||||||||||||| | |||||||||||||| || ||||||||||||  |||   ||| ||    
T  6275516 cagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaa 6275417  T
Q  122 agcagtatctcaaaatgt 139  Q
    | ||||||||||||||||    
T  6275416 atcagtatctcaaaatgt 6275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 458 - 538
Target Start/End: Complemental strand, 6457639 - 6457559
Alignment:
Q  458 ttgaacagtaagcaggtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatccaaatgtgat 538  Q
    |||| |||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | ||||| |||||||| ||||||||    
T  6457639 ttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcctaatgtgat 6457559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 6322385 - 6322298
Alignment:
Q  20 aacagatcctaaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttctt 107  Q
    |||||||||||||||||||||  ||   || ||||| ||  |||||||||||||||| |||||||||||||| || ||||||||||||    
T  6322385 aacagatcctaaaagtgagagacgggacgactttgtttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttctt 6322298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 256
Target Start/End: Complemental strand, 6451938 - 6451743
Alignment:
Q  61 ttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaaagcagtatctcaaaatgtggtccctgcattagagtctgt 160  Q
    ||||||||||||||  ||||||||||||||| |||||||| |||||||  |||||| | ||  || | || ||| | ||  | |||   ||| | |||||    
T  6451938 ttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaagtcattgtcacaagacgttttgcctttgttacaatctgt 6451839  T
Q  161 aatctttgatttaaatttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtact 256  Q
    ||| |||||| | |||||||| || ||||||||||||||||| |||||||| | |||| | |  || |||||||||||||| || |||||| ||||    
T  6451838 aatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatact 6451743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 6332960 - 6332850
Alignment:
Q  29 taaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaaagcagta 128  Q
    ||||||||||||| |||| || ||||| ||  |||||||||||||| | ||||| |||||||| || ||||| ||||||  ||||  ||||||| ||| |    
T  6332960 taaaagtgagagtcggagcgactttgtttacattccaagagatgaatcatttggccacttgaagtcttcagactttcttgtttatatactgaaatcagca 6332861  T
Q  129 tctcaaaatgt 139  Q
    |||||||||||    
T  6332860 tctcaaaatgt 6332850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 468 - 538
Target Start/End: Complemental strand, 6451440 - 6451370
Alignment:
Q  468 agcaggtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatccaaatgtgat 538  Q
    |||| |||||||||||  |||||||||||||||| |||||| ||||| ||||| |||||||| ||||||||    
T  6451440 agcaagtctgcatggaatactgatgaagaatttggaagagagatgcttgctggtgtaaatcctaatgtgat 6451370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 6263853 - 6263797
Alignment:
Q  473 gtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcc 529  Q
    ||||||||||||||||||||| ||||||| |||||| || || ||||| ||||||||    
T  6263853 gtctgcatggatgactgatgatgaatttggaagagagattcttgctggtgtaaatcc 6263797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 530
Target Start/End: Complemental strand, 6289584 - 6289527
Alignment:
Q  473 gtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 530  Q
    ||||| |||||||||||||||||||||| ||||||| ||| | ||||| || ||||||    
T  6289584 gtctggatggatgactgatgaagaatttacaagagagatgattgctggtgtgaatcca 6289527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 530
Target Start/End: Complemental strand, 6321966 - 6321909
Alignment:
Q  473 gtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 530  Q
    |||||| |||||||||||||||||||||||||| || ||| | ||||| || ||||||    
T  6321966 gtctgcgtggatgactgatgaagaatttgcaagggagatgattgctggtgtgaatcca 6321909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 530
Target Start/End: Complemental strand, 6332540 - 6332483
Alignment:
Q  473 gtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 530  Q
    |||||||||||||||||||| |||||||||||| || ||| | ||||| || ||||||    
T  6332540 gtctgcatggatgactgatggagaatttgcaagggagatgattgctggtgtgaatcca 6332483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 532
Target Start/End: Complemental strand, 6391539 - 6391482
Alignment:
Q  475 ctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatccaaa 532  Q
    ||||||||||||||||||| ||||||||||| || ||| | ||||| || ||||||||    
T  6391539 ctgcatggatgactgatgaggaatttgcaagggagatgattgctggtgtgaatccaaa 6391482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 6275096 - 6275040
Alignment:
Q  474 tctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 530  Q
    |||| |||||||||||| ||||||||| ||||||| ||| | ||||| |||||||||    
T  6275096 tctggatggatgactgacgaagaatttacaagagagatgattgctggtgtaaatcca 6275040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 6363731 - 6363675
Alignment:
Q  474 tctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 530  Q
    |||||||||||||||||||| ||||||||||| || ||| | ||||| || ||||||    
T  6363731 tctgcatggatgactgatgaggaatttgcaagggagatgattgctggggtgaatcca 6363675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 6424622 - 6424566
Alignment:
Q  474 tctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 530  Q
    ||||| |||||||||||||| ||||||||||| || ||| | |||||||| ||||||    
T  6424622 tctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcca 6424566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 473 - 530
Target Start/End: Original strand, 36744660 - 36744717
Alignment:
Q  473 gtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 530  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  36744660 gtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 36744717  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 46710939 - 46710884
Alignment:
Q  474 tctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcc 529  Q
    ||||||||||  ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  46710939 tctgcatggagaactgatgaagaatttgctagagaaatgctggctggtgtaaatcc 46710884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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