View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0027_high_1 (Length: 354)
Name: NF0027_high_1
Description: NF0027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0027_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 44014645 - 44014958
Alignment:
| Q |
30 |
aagttgaagatcctttagagatcagaatttgatccttcatatctccatatcgtctccgcatacctttctttgtgagttgaggcagtctcaagaaaggcct |
129 |
Q |
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| T |
44014645 |
aagttgaagatcctttagagatcataatttgatccttcatatctccatatcgtctccgcatacatttctttgtgagttgaggcagtctcaagaaaggcct |
44014744 |
T |
|
| Q |
130 |
taaaaccattagcttcaagttgatgatcatatgcttcttcgacaaaaagttccctgacaagacaaagttagacgtcaattgcatcgttgactcaactaag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44014745 |
taaaaccattagcttcaagttgatgatcatatgcttcttcgacaaaaagttccctgacgagacaaagttagacgtcaattgcatcgttgactcaactaag |
44014844 |
T |
|
| Q |
230 |
gcgcgatagagttttcctagtacccctttggatacatacataggcttttcaaatctctccatgaaatctggaaactcttttggtttcaaaactctaggca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44014845 |
gcgcgatagagttttcctagtacccctttggatacatacataggcttttcaaatctctccatgaaatctggaaactcttttggtttcaaaactctaggca |
44014944 |
T |
|
| Q |
330 |
tttcagcaacagct |
343 |
Q |
| |
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||||||||| |||| |
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| T |
44014945 |
tttcagcaagagct |
44014958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 333
Target Start/End: Original strand, 44015980 - 44016224
Alignment:
| Q |
87 |
gcatacctttctttgtgagttgaggcagtctcaagaaaggccttaaaaccattagcttcaagttgatgatcatatgcttcttcgacaaaaagttccctga |
186 |
Q |
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|||||| | ||| ||||| || ||||||||||||||||| ||| |||||||| | ||||||| || |||||||||||||||| | |||| ||| | || |
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| T |
44015980 |
gcatacatatctctgtgacttaaggcagtctcaagaaagacctcaaaaccatcaacttcaagctggtgatcatatgcttctttggcaaac--ttctcaga |
44016077 |
T |
|
| Q |
187 |
caagacaaagttagacgtcaattgcatcgttgactcaactaaggcgcgatagagttttcctagtacccctttggatacatacataggcttttcaaatctc |
286 |
Q |
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|| ||| | || | || | | ||||| |||| |||| | |||||| ||||||||||||| ||| |||||||||| ||||||||||||||| || ||| |
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| T |
44016078 |
catgaccatgtcaaaccttacttgcaagtttgaatcaattgtggcgcggtagagttttcctaatacacctttggatatatacataggcttttcgaacctc |
44016177 |
T |
|
| Q |
287 |
tccatgaaatctggaaactcttttggtttcaaaactctaggcatttc |
333 |
Q |
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||||| ||||||||||||||| ||||||||||| ||| |||||||| |
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| T |
44016178 |
tccataaaatctggaaactctcttggtttcaaagatcttggcatttc |
44016224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 44015824 - 44015872
Alignment:
| Q |
34 |
tgaagatccttta--gagatcagaatttgatccttcatatctccatatc |
80 |
Q |
| |
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||||||||||||| ||||| |||||| ||||||||||||||||||||| |
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| T |
44015824 |
tgaagatcctttactgagattagaattcgatccttcatatctccatatc |
44015872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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