View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0027_high_2 (Length: 285)
Name: NF0027_high_2
Description: NF0027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0027_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 47186177 - 47186003
Alignment:
| Q |
46 |
agcagagaaaaacaagaaaattccaaacttaaggtggcacaacatggacaagaaagcttgagcaataagaagagtgaacaacatgtttgtaaacacagtc |
145 |
Q |
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| T |
47186177 |
agcagagaaaaacaagaaaattccaaacttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtc |
47186078 |
T |
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| Q |
146 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgac |
220 |
Q |
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| T |
47186077 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgac |
47186003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 47198716 - 47198542
Alignment:
| Q |
46 |
agcagagaaaaacaagaaaattccaaacttaaggtggcacaacatggacaagaaagcttgagcaataagaagagtgaacaacatgtttgtaaacacagtc |
145 |
Q |
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||||||||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47198716 |
agcagagaaaaacaaaaaaatcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtc |
47198617 |
T |
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| Q |
146 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgac |
220 |
Q |
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| T |
47198616 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgac |
47198542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 216
Target Start/End: Original strand, 748488 - 748656
Alignment:
| Q |
48 |
cagagaaaaacaagaaaattccaaacttaaggtggcacaacatggacaagaaagcttgagcaataagaagagtgaacaacatgtttgtaaacacagtcac |
147 |
Q |
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||||||| |||||||| ||||||||||| | |||||| ||||| || | ||||| |||||||| | || |||||||||||||| | | || || || |
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| T |
748488 |
cagagaagaacaagaagattccaaacttgaagtggcataacatagatagaaaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgac |
748587 |
T |
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| Q |
148 |
actttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggacccca |
216 |
Q |
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||||||||||||||||| |||||| | |||||||||||||| ||||| | |||||| || |||||||| |
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| T |
748588 |
actttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataagccaaccgagaggacccca |
748656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 1356896 - 1356829
Alignment:
| Q |
149 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggacccca |
216 |
Q |
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|||||||||||||||||| ||||||| ||||| ||||||| || | ||||||||| ||||||||||| |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggacccca |
1356829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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