View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0027_low_1 (Length: 531)
Name: NF0027_low_1
Description: NF0027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0027_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 21 - 502
Target Start/End: Complemental strand, 54496812 - 54496331
Alignment:
| Q |
21 |
acatcatcatcaccaatgaaacccccaaccacacgatgaatccaagaccagcagcagcacctttattaccggacgaatttggtgacggtgaaggcgaagg |
120 |
Q |
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| T |
54496812 |
acatcatcatcaccaatgaaacccccaaccacatgatgaatccaagaccagcagcaccacctttattaccggacgaatttggtgacggtgaaggcgaagg |
54496713 |
T |
|
| Q |
121 |
tggcataggcattgtaattagaggtgggagaactaggtcatgcttgttttggacaacgacagccagctttaatcccatcttgcaatgacgctttgttcca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54496712 |
tggcataggcattgtaattagaggtgggagaactaggtcatgcttgttttggacaacgacagccagctttaatcccatcttgcaatgacgctttgttcca |
54496613 |
T |
|
| Q |
221 |
cttatgaaatgatatactcctattttatcaagcacaaccttagtgttgccgtcgtggtgctccacatgttctccatttgtatgacacattatataatcat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54496612 |
cttatgaaatgatatactcctattttatcaagcacaaccttagtgttgccgtcgtggtgctccacatgttctccatttgtatgacacattatataatcat |
54496513 |
T |
|
| Q |
321 |
gctcattcacttcgtgcactgattctgtttcgttatcgtactcaaacactgcatgtatacatgcataaatacgagaaacaaattcatcattttttatatg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54496512 |
gctcattcacttcgtgcactgattctgtttcgttatcgtactcaaacactgcatgtatacatgcataaatacgagaaacaaattcatcattttttatatg |
54496413 |
T |
|
| Q |
421 |
tagttaagaagtaattaattaagaggaatgatatatggcttacgaatggtatcaccgactgtgaattcgtgagcagaggccc |
502 |
Q |
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| T |
54496412 |
tagttaagaagtaattaattaagaggaatgctatatggcttacggatggtatcaccgactgtgaattcgtgagcagaggccc |
54496331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 54504760 - 54504639
Alignment:
| Q |
173 |
acaacgacagccagctttaatcccatcttgcaatgacgctttgttccacttatgaaatgatatactcctattttatcaagcacaaccttagtgttgccgt |
272 |
Q |
| |
|
||||| ||||| |||||||| |||| | |||||||||||||| |||||||||||||||||| || |||| |||| | |||||| ||| | || ||||||| |
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| T |
54504760 |
acaacaacagctagctttaaacccaacctgcaatgacgcttttttccacttatgaaatgatgtattcctgttttcttaagcaccaccattgtattgccgt |
54504661 |
T |
|
| Q |
273 |
cgtggtgctccacatgttctcc |
294 |
Q |
| |
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||| ||| || ||||| ||||| |
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|
| T |
54504660 |
cgtagtggtctacatgctctcc |
54504639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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