View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0027_low_11 (Length: 201)
Name: NF0027_low_11
Description: NF0027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0027_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 38252776 - 38252676
Alignment:
| Q |
1 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38252776 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatctt |
38252677 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
38252676 |
a |
38252676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 43156766 - 43156866
Alignment:
| Q |
1 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43156766 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatctt |
43156865 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
43156866 |
a |
43156866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 28245961 - 28245861
Alignment:
| Q |
1 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28245961 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatctt |
28245862 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
28245861 |
a |
28245861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11474090 - 11474190
Alignment:
| Q |
1 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11474090 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttaattttacttgttttggtgactgccataattttacatgtatctt |
11474189 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
11474190 |
a |
11474190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 50019529 - 50019454
Alignment:
| Q |
1 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtga |
76 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| |
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| T |
50019529 |
ccacgtaaagaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtga |
50019454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 19307638 - 19307538
Alignment:
| Q |
1 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19307638 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttatttttacttgttttggtgactgccataattttacatgtatctt |
19307539 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
19307538 |
a |
19307538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 25382203 - 25382303
Alignment:
| Q |
1 |
ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382203 |
ccacctaaagaaaaaagttcacaggtatatgagttggtatttaaagtacttgttttaattttacttgttttggtgactgccataattttacatgtatctt |
25382302 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
25382303 |
a |
25382303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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