View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0027_low_3 (Length: 454)
Name: NF0027_low_3
Description: NF0027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0027_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 24438788 - 24438379
Alignment:
| Q |
1 |
aaatcaaacttgccagggtttacaacactcgcacaccctgagcactaaccaccggcnnnnnnnn-cttgattacacaattattagttcttttgacaccat |
99 |
Q |
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||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || |
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| T |
24438788 |
aaatcgaacttgccaggatttacatcactcgcacaccctgagcactaaccaccggctttttttttcttgattacacaattattagttctttcgacattat |
24438689 |
T |
|
| Q |
100 |
attttccgttgttatctgactgcatcactattttcagttggttgcctgagcatgttacaatactagctcgctttagtggggagccatcccctgtgaaatc |
199 |
Q |
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| T |
24438688 |
attttccgttgttatctgactgcataactattttcagttggttgcctgagcatgttacaatactagctcgctttagtggggagccatcccctgtgaaatc |
24438589 |
T |
|
| Q |
200 |
tactgttacaaaagctgttgccgaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactaaagagcaacttgaggtagctttc |
299 |
Q |
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| T |
24438588 |
tactgttacaaaagctgttgcagaattccggcggacccatgctgacacatggaatgttcagaaagagttattcactaaagagcaacttgaggtagctttc |
24438489 |
T |
|
| Q |
300 |
tatgtagacgaaacgtattgtgctatgatttggaaaacgtaattattacttgtgttttttattttatatgtgttctaatgtttatttttcccccatattc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24438488 |
tatgtagacgaaacgtattgtgctatgatttggaaaacctaattattacttgtgttttttattttatatgtgtcctaatgtttatttttcccccatattc |
24438389 |
T |
|
| Q |
400 |
acaggttctg |
409 |
Q |
| |
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|||| ||||| |
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| T |
24438388 |
acagattctg |
24438379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 65 - 409
Target Start/End: Complemental strand, 24463952 - 24463609
Alignment:
| Q |
65 |
cttgattacacaattattagttcttttgacaccatattttccgttgttatctgactgcatcactattttcagttggttgcctgagcatgttacaatacta |
164 |
Q |
| |
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|||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| |
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| T |
24463952 |
cttgattacacaattattggttcttttgacactatgttttccgttgttatctgactgcataactactttcagttggttgcctgagcatgttacactacta |
24463853 |
T |
|
| Q |
165 |
gctcgctttagtggggagccatcccctgtgaaatctactgttacaaaagctgttgccgaattccggcggacccatgctgacacatggaatgttcagaaag |
264 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24463852 |
gctcgctttagtggggagccatcccctgtgaaatccactgttacaaaagctgttgcagaattccggcggacccatgctgacacatggaatgttcagaaag |
24463753 |
T |
|
| Q |
265 |
agttattcactaaagagcaacttgaggtagctttctatgtagacgaaacgtattgtgctatgatttggaaaacgtaattattacttgtgttttttatttt |
364 |
Q |
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||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24463752 |
agttattcactgaagagcagcttgaggtagcttt-tatgtagacgaaacatattgtgctatgatttggaaaacgtaattattacttgtgttttttatttt |
24463654 |
T |
|
| Q |
365 |
atatgtgttctaatgtttatttttcccccatattcacaggttctg |
409 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
24463653 |
atatgtgtcctaatgtttatttctcccccatattcacagattctg |
24463609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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