View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0027_low_9 (Length: 223)
Name: NF0027_low_9
Description: NF0027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0027_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26427902 - 26427778
Alignment:
| Q |
1 |
atcactacttttcaacatcatgaacaagaacaatttgtgcaacaaaaccaccatttttcctctaactatttgaatgaaacttctcttttagatgaaagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26427902 |
atcactacttttcaacatcatgaacaagaacaatttgtccaacaaaaccaccatttttcctctaactatttgaatgaaacttctcttttagatgaaagct |
26427803 |
T |
|
| Q |
101 |
tcatttttcaaactccttgttttta |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26427802 |
tcatttttcaaactccttgttttta |
26427778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 28009058 - 28009107
Alignment:
| Q |
65 |
actatttgaatgaaacttctcttttagatgaaagcttcatttttcaaact |
114 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28009058 |
actatttcaatgaagcttctcttttagatgaaagcttcatttttcaaact |
28009107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28009021 - 28009053
Alignment:
| Q |
1 |
atcactacttttcaacatcatgaacaagaacaa |
33 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
28009021 |
atcaccacttttcaacatcatgaacaagaacaa |
28009053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 770 times since January 2019
Visitors: 1108