View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028-INSERTION-1 (Length: 562)
Name: NF0028-INSERTION-1
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028-INSERTION-1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 7 - 562
Target Start/End: Complemental strand, 43476580 - 43476031
Alignment:
| Q |
7 |
aggtaccatataaacttttctcggaagattatcatttaaaaaggggtctatattaggagaatactattgacgaacatcttcgctggtttatttagaaaga |
106 |
Q |
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| T |
43476580 |
aggtaccatataaacttttctcggaagattatcatttaaaaaggtgtctatattaggagaatactattgacggacatcttcgctggtt-atttagaaaga |
43476482 |
T |
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| Q |
107 |
catttttcccctttgacttctcccatgattacgagaaatatgccattgacgaacatatgcaacaacaataagagtgcggatagaggtcatcttatcttgg |
206 |
Q |
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| T |
43476481 |
catttttcccctttgacttctcccatgattacgagaaatgtgccattgacgaacatatgcaacaacaataagagtgtggatagaggtcatcttatcttgg |
43476382 |
T |
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| Q |
207 |
tcatgagtagatgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaactagc |
306 |
Q |
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| T |
43476381 |
tcatgagtagatgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaaccgatccatcaaactagc |
43476282 |
T |
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| Q |
307 |
tttgatcttgtatgtcaaatgtgacccaataccacattttcttgctcgaagaggtattatctcaaatatacgttttccaaagttttcttacaagatgagt |
406 |
Q |
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| T |
43476281 |
tttgatcttgtatgtcaaatgtgacccaataccacattttcttgctcgaagaggtattatctcaaatatatgttttccaaagtcttcttacaagatgagt |
43476182 |
T |
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| Q |
407 |
ctttttagtgaaagacagtaggtcaaattcataaggatgactgttggggccaaaatgagaccctagaaaggagagtgtcaaggaattagaaccatacgaa |
506 |
Q |
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| T |
43476181 |
ctttttagtgaaaaacagtaggtcaaattcataaggatgactgttggggccaaaatgag-----agaaaggagagtgtcaaggaattagaaccatacgaa |
43476087 |
T |
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| Q |
507 |
aaggaaatgaccaaaacttgagggcatttgtctaatatgttccaaaggatttatga |
562 |
Q |
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| T |
43476086 |
aaggaaatgaccaaaacttgagggcatttgtccaatacgttcaaaaggatttatga |
43476031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 47937437 - 47937613
Alignment:
| Q |
141 |
gaaatatgccattgacgaacatatgcaacaacaataagagtgcggatagaggtcatcttatcttggtcatgagtagatgtttcttcataatccatactat |
240 |
Q |
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| T |
47937437 |
gaaatatgccactgacgtatagatgcaacagcaataagagtgcggatagtggtcatttttgcaacgg---gagcaaatgtttcttcataatccataccat |
47937533 |
T |
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| Q |
241 |
aatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaac-tagctttgatcttgtat |
319 |
Q |
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| T |
47937534 |
actgttgagcgaatcccttagcaacaagacgagctttgtagcgttcaactgacccatcagacttagttttgatcttgtat |
47937613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 47631013 - 47631116
Alignment:
| Q |
217 |
atgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaac-tagctttgatctt |
315 |
Q |
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| T |
47631013 |
atgtttcttcataatccataccatactgttgagaaaatcccttagcaacaagacgagctttgtagcgttcaactgacccatcagacttagttttgatctt |
47631112 |
T |
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| Q |
316 |
gtat |
319 |
Q |
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|||| |
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| T |
47631113 |
gtat |
47631116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 10052692 - 10052795
Alignment:
| Q |
217 |
atgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaac-tagctttgatctt |
315 |
Q |
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||||||||||||||||||||| ||| |||||| ||||| ||||| ||||||||||||||||| | |||||||| |||||| || ||| ||||||||| |
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| T |
10052692 |
atgtttcttcataatccataccatactgttgagcgaatcccttagcaacaagacgagctttgtagcgttcaactgacccatcagacttagttttgatctt |
10052791 |
T |
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| Q |
316 |
gtat |
319 |
Q |
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| T |
10052792 |
gtat |
10052795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 46821174 - 46821071
Alignment:
| Q |
217 |
atgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaac-tagctttgatctt |
315 |
Q |
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||||||||||||||||||||| ||| |||||| ||||| ||||| ||||||||||||||||| | |||||||| |||||| || ||| ||||||||| |
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| T |
46821174 |
atgtttcttcataatccataccatactgttgagtgaatcccttagcaacaagacgagctttgtagcgttcaactgacccatcagacttagttttgatctt |
46821075 |
T |
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| Q |
316 |
gtat |
319 |
Q |
| |
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|||| |
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| T |
46821074 |
gtat |
46821071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 9878643 - 9878727
Alignment:
| Q |
219 |
gtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaact |
303 |
Q |
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| T |
9878643 |
gtttcttcataatctaaaccatattgttgagaatatcctttagccacaagacgagctttgtaacgctcaacagacccatcaaact |
9878727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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