View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0028-INSERTION-12 (Length: 417)

Name: NF0028-INSERTION-12
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0028-INSERTION-12
NF0028-INSERTION-12
[»] chr8 (5 HSPs)
chr8 (53-326)||(41481819-41482092)
chr8 (68-326)||(41485100-41485356)
chr8 (357-417)||(41482123-41482185)
chr8 (8-48)||(41481141-41481181)
chr8 (360-417)||(41485392-41485451)
[»] chr3 (7 HSPs)
chr3 (182-316)||(5697702-5697834)
chr3 (138-287)||(5701153-5701301)
chr3 (181-316)||(5736352-5736485)
chr3 (181-316)||(5773464-5773597)
chr3 (164-267)||(5694770-5694873)
chr3 (360-417)||(5736261-5736318)
chr3 (360-417)||(5773373-5773430)
[»] chr2 (4 HSPs)
chr2 (189-268)||(45385973-45386052)
chr2 (77-191)||(45386079-45386193)
chr2 (360-407)||(45385677-45385724)
chr2 (257-324)||(45385763-45385830)
[»] chr1 (2 HSPs)
chr1 (381-413)||(20434509-20434541)
chr1 (373-409)||(20435055-20435091)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 53 - 326
Target Start/End: Original strand, 41481819 - 41482092
Alignment:
Q  53 atactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttatt 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41481819 atactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcttgacattggtcacatgttttcgtactctagaatggtttctttatt 41481918  T
Q  153 ggcaaagttgtgaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcag 252  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41481919 ggcaaagttgtgaagccacacctcgtaatcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcag 41482018  T
Q  253 aattatgtataatatagctaatgtggtttgttggtggaaagattcactagctgtttcttaccaagaagttagag 326  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41482019 aattatttataatatagcttatgtggtttgttggtggaaagattcactagctgtttcttaccaagaagttagag 41482092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 68 - 326
Target Start/End: Original strand, 41485100 - 41485356
Alignment:
Q  68 tttctagaacaaactt-acagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaa 166  Q
    |||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||| |||| | | |||||    
T  41485100 tttctagaacaaactttacagcagatgtcatctacttttcttgtcattggtgacatgttttcgcactctagaatggtttctttatgggcagaatagtgaa 41485199  T
Q  167 gccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataata 266  Q
    |||||||||| || ||||||||||||| | |||||||| |||| ||||||||||||||  |||||||||||| ||||| |||||||  ||||||||||||    
T  41485200 gccacacctcatattcacatgttttgctggaaccacaagattcgcaactagtactattccgtgcttgttgctagggataatttcagttttatgtataata 41485299  T
Q  267 tagctaatgtggtttgttggtggaaagattcactagctgtttcttaccaagaagttagag 326  Q
    ||||| || |||||||||| |||||| ||||||||   ||||||||||||||||||||||    
T  41485300 tagcttatttggtttgttgatggaaaaattcacta---gtttcttaccaagaagttagag 41485356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 41482123 - 41482185
Alignment:
Q  357 gtgctaaatgttaacctgtgcatctctca--gggaatttctacttgctatgtttattgtggtg 417  Q
    ||||||||||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  41482123 gtgctaaatgtgaacctgtgcatctctcaggggggatttctacttgctatgtttattgtggtg 41482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 41481141 - 41481181
Alignment:
Q  8 tacataacactaaaatctccctttttctctaacatcagtat 48  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  41481141 tacataacactaaaatctccctttttctctaaaatcagtat 41481181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 41485392 - 41485451
Alignment:
Q  360 ctaaatgttaacctgtgcatctctca--gggaatttctacttgctatgtttattgtggtg 417  Q
    |||||||| |||||||||||||||||  ||| |||||||||||||||||||||| |||||    
T  41485392 ctaaatgtgaacctgtgcatctctcaggggggatttctacttgctatgtttattatggtg 41485451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 182 - 316
Target Start/End: Complemental strand, 5697834 - 5697702
Alignment:
Q  182 cacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataatatagctaatgtggttt 281  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||| |||||||  ||||| |||||||  || |||| ||||    
T  5697834 cacatgttttgcattaaccccaaaattcacaactagtactattttgtgcttgttgcttgagataatttcagttttatgaataatat--cttatgtagttt 5697737  T
Q  282 gttggtggaaagattcactagctgtttcttaccaa 316  Q
    ||||||||||| |||| |||| |||||||||||||    
T  5697736 gttggtggaaaaattccctagttgtttcttaccaa 5697702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 287
Target Start/End: Complemental strand, 5701301 - 5701153
Alignment:
Q  138 aatggtttctttattggcaaagttgtgaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgc 237  Q
    ||||||||||| || || |  |||||||||||||||||| || ||||||||||||||| |||||||| |||||| |||||| |||| | ||||||||||     
T  5701301 aatggtttcttcatgggaagtgttgtgaagccacacctcatactcacatgttttgcagaaaccacaagattcacgactagttctatctggtgcttgttgt 5701202  T
Q  238 ttgggatgatttcagaattatgtataatatagctaatgtggtttgttggt 287  Q
    ||| |||||||||||  |||||||||| |||||| ||| ||||| |||||    
T  5701201 ttgagatgatttcagttttatgtataa-atagcttatgcggtttattggt 5701153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 5736485 - 5736352
Alignment:
Q  181 tcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataatatagctaatgtggtt 280  Q
    |||||||||||||| |||||  || ||||||||||||||||||||| |||||||| |||| ||| |||||||  ||||| |||||||  || ||||  ||    
T  5736485 tcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgtttcttgagataatttcagttttatgaataatat--cttatgtattt 5736388  T
Q  281 tgttggtggaaagattcactagctgtttcttaccaa 316  Q
    ||||||| |||| ||||  ||| |||||||||||||    
T  5736387 tgttggttgaaaaattcgttagttgtttcttaccaa 5736352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 5773597 - 5773464
Alignment:
Q  181 tcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataatatagctaatgtggtt 280  Q
    |||||||||||||| |||||  || ||||||||||||||||||||| |||||||| |||| ||| |||||||  ||||| |||||||  || ||||  ||    
T  5773597 tcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgtttcttgagataatttcagttttatgaataatat--cttatgtattt 5773500  T
Q  281 tgttggtggaaagattcactagctgtttcttaccaa 316  Q
    ||||||| |||| ||||  ||| |||||||||||||    
T  5773499 tgttggttgaaaaattcgttagttgtttcttaccaa 5773464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 5694873 - 5694770
Alignment:
Q  164 gaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtata 263  Q
    |||||||||| || |  |||||||||||||| |||||  || ||||||||||||||||||||| ||||||||||||| ||| |||||||  ||||| |||    
T  5694873 gaagccacacttcattttcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgttgcttgagataatttcagttttatgaata 5694774  T
Q  264 atat 267  Q
    ||||    
T  5694773 atat 5694770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 5736318 - 5736261
Alignment:
Q  360 ctaaatgttaacctgtgcatctctcagggaatttctacttgctatgtttattgtggtg 417  Q
    |||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  5736318 ctaattgtgaacctgtgcatctctcagggaatttctacttgccatgttaattgtggtg 5736261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 5773430 - 5773373
Alignment:
Q  360 ctaaatgttaacctgtgcatctctcagggaatttctacttgctatgtttattgtggtg 417  Q
    |||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  5773430 ctaattgtgaacctgtgcatctctcagggaatttctacttgccatgttaattgtggtg 5773373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 45386052 - 45385973
Alignment:
Q  189 tttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatgtataatata 268  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  45386052 tttgcagtaaccacaagattcacaactagtactattttgtacttgttgcttgggatgatttcagttttatgtataatata 45385973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 45386193 - 45386079
Alignment:
Q  77 caaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaagccacacctc 176  Q
    |||||||| | || || ||||||||||||| || |||||||  |||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||    
T  45386193 caaacttatatcaaatttcatctacttttcttgtcattggtggcatgttttcgcactctagaatggtttctttataggcagagttgtgaagccacgcctc 45386094  T
Q  177 gtagtcacatgtttt 191  Q
     || |||||||||||    
T  45386093 atattcacatgtttt 45386079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 45385724 - 45385677
Alignment:
Q  360 ctaaatgttaacctgtgcatctctcagggaatttctacttgctatgtt 407  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||    
T  45385724 ctaaatgtgaacctgtgcatctctcagggaatttctacttgctttgtt 45385677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 45385830 - 45385763
Alignment:
Q  257 atgtataatatagctaatgtggtttgttggtggaaagattcactagctgtttcttaccaagaagttag 324  Q
    |||||||||||| || ||| || ||||||||||||| ||||||||| ||||| ||||| |||||||||    
T  45385830 atgtataatataacttatgcggattgttggtggaaaaattcactaggtgtttattacctagaagttag 45385763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 20434541 - 20434509
Alignment:
Q  381 tctcagggaatttctacttgctatgtttattgt 413  Q
    |||| ||||||||||||||||||||||||||||    
T  20434541 tctctgggaatttctacttgctatgtttattgt 20434509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 20435091 - 20435055
Alignment:
Q  373 tgtgcatctctcagggaatttctacttgctatgttta 409  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  20435091 tgtggatctctcagagaatttctacttgctatgttta 20435055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 614 times since January 2019
Visitors: 1099