View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028-INSERTION-13 (Length: 370)
Name: NF0028-INSERTION-13
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028-INSERTION-13 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 26828687 - 26828941
Alignment:
| Q |
10 |
agcaacaacactgtatggctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaat |
109 |
Q |
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| T |
26828687 |
agcaataacgctgtatggctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaaat |
26828786 |
T |
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| Q |
110 |
cacaatctatgttcaatgatgtgaacttccatttcaaaaagttggatgcatagnnnnnnnnnnnnnnnnnnnnnnnctcagttcaagtgtttgattatgg |
209 |
Q |
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| T |
26828787 |
cacaatctatgttcaatgacgtaaacttccatttcaaaaagttggatgcatagtttatatattttttttttattttctcagttcaagtgtttgattatgg |
26828886 |
T |
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| Q |
210 |
tacttcaatgcaatgtagatagcgtttcaaaccaagtatagtcacactccagagg |
264 |
Q |
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| T |
26828887 |
tacttcaatgcaatgtagatagcgtttcaaaccaagtatagtcacactccagagg |
26828941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 26641207 - 26641334
Alignment:
| Q |
28 |
ctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatctatgttcaatg |
127 |
Q |
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| T |
26641207 |
ctcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttc-------atcacaatctcagttcaatg |
26641299 |
T |
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| Q |
128 |
atgtgaacttccatttcaaaaagttggatgcatag |
162 |
Q |
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| T |
26641300 |
atgtgaacttccatttcaaaaatttggatgcatag |
26641334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 26747173 - 26747300
Alignment:
| Q |
28 |
ctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatctatgttcaatg |
127 |
Q |
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| T |
26747173 |
ctcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttc-------atcacaatctcagttcaatg |
26747265 |
T |
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| Q |
128 |
atgtgaacttccatttcaaaaagttggatgcatag |
162 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
26747266 |
atgtgaacttccatttcaaaaatttggatgcatag |
26747300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 370
Target Start/End: Original strand, 26641396 - 26641570
Alignment:
| Q |
203 |
attatggtacttcaatgcaatgtagatagcgtttcaaaccaagtatagtcacactc--cagagggagatttccacatcaaagaaagaaaatga---aaac |
297 |
Q |
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||||||||| ||||||| ||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||| | ||| |
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| T |
26641396 |
attatggtatttcaatgtaatgtagattgcatttcaaaacaagtatagtcacactctatagagggagatttccacatcaaaggaaaaaaagtaaataaat |
26641495 |
T |
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| Q |
298 |
atccaaa--tgtgtttgtaatgtgaggagtactagcagtaacacagcctttaatgcacatttaagtttataattc |
370 |
Q |
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| T |
26641496 |
atccaaatgtgtgtttgtattgtgaggagtactagcaataacacagcctttaacacgcatttgcgtttataattc |
26641570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 370
Target Start/End: Original strand, 26747362 - 26747536
Alignment:
| Q |
203 |
attatggtacttcaatgcaatgtagatagcgtttcaaaccaagtatagtcacactc--cagagggagatttccacatcaaagaaagaaaatga---aaac |
297 |
Q |
| |
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||||||||| ||||||| ||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||| | ||| |
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| T |
26747362 |
attatggtatttcaatgtaatgtagattgcatttcaaaacaagtatagtcacactctatagagggagatttccacatcaaaggaaaaaaagtaaataaat |
26747461 |
T |
|
| Q |
298 |
atccaaa--tgtgtttgtaatgtgaggagtactagcagtaacacagcctttaatgcacatttaagtttataattc |
370 |
Q |
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||||||| |||||||||| ||||||||||||||||| ||||||||||||||| | ||||| ||||||||||| |
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| T |
26747462 |
atccaaatgtgtgtttgtattgtgaggagtactagcaataacacagcctttaacacgcatttgcgtttataattc |
26747536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 26890864 - 26890933
Alignment:
| Q |
38 |
tatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaa |
107 |
Q |
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||||||||| |||| |||| || |||||| ||||||||||| ||||||| ||| ||||||||| |||||| |
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| T |
26890864 |
tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaa |
26890933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 18682788 - 18682666
Alignment:
| Q |
29 |
tcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatctatgttcaatga |
128 |
Q |
| |
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||||||| |||||||||||||| |||| ||||||||| || |||||||| | | ||| || ||||||||| |||||| ||| ||| |||||| |
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| T |
18682788 |
tcatgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaa-------tctctgtacaatga |
18682696 |
T |
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| Q |
129 |
tgtgaacttccatttcaaaaagttggatgc |
158 |
Q |
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||||||| | |||||||||||||||||||| |
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| T |
18682695 |
tgtgaaccttcatttcaaaaagttggatgc |
18682666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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