View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0028-INSERTION-16 (Length: 602)
Name: NF0028-INSERTION-16
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028-INSERTION-16 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 602
Target Start/End: Original strand, 24694997 - 24695579
Alignment:
| Q |
15 |
tcttttaaaggttacagagacaaacggacaaagattttgaaataaaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattac |
114 |
Q |
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||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24694997 |
tcttttaaaggtt-cggagacaaacggataaagattttgaaatacaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattac |
24695095 |
T |
|
| Q |
115 |
acctagccnnnnnnnnnnnnnnntgccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatccacacaatcccaaa |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
24695096 |
acctagccaaaaaagacaaaaaatgccctccacctcaattttgaaaccaccca-----------caaatcttagctagataatatccacacaatcccaaa |
24695184 |
T |
|
| Q |
215 |
gcaaataataccatagcacaataccacccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattag |
314 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695185 |
gcaaataataccatagcacaataccatccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattag |
24695284 |
T |
|
| Q |
315 |
atggtatgaattaagtcacttgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacacca |
414 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695285 |
atggtatgaattaagtcacctgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacacca |
24695384 |
T |
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| Q |
415 |
ttgtacaatgttgtaattattgatctttaatttaatacgcaaccagttccaagaataaactttcatctcctcgtgca-nnnnnnnnngtgcctttatttg |
513 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24695385 |
ctgcacaatgttgtaattattgatatttaatttaatacgcaaccagttccaagaataaactttcatctcctcgtgcattttttttttgtgcctttatttg |
24695484 |
T |
|
| Q |
514 |
ttgtgaaata-------gtttcttgtctttcaaatgttccacacacatgtgaaccaaactacattgacacgcttttgagaatgctcttcttctacc |
602 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24695485 |
ttgggaaatagtttcttgtttcttgtctttcaaatgttccacacacatgtgaaccaaactacattgacacgc-tttgagaatgctcttcttctacc |
24695579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 221 - 595
Target Start/End: Original strand, 24707724 - 24708106
Alignment:
| Q |
221 |
aataccatagcacaataccacccaaattgttgcaaacctaacacactgctatgataa-gacacaaccgagacaaataaaatctgagctgaattagatggt |
319 |
Q |
| |
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||||||| |||||| ||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
24707724 |
aataccagagcacagtaccacccaaactgctgcaaacctaacacactgctacgataaagacacaaccgagacaaataaaatctgagttgaattagagggt |
24707823 |
T |
|
| Q |
320 |
atgaattaagtcacttgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccattgta |
419 |
Q |
| |
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||||||||||||| || ||||||| |||||||||||||| |||| |||||||||| ||||||| ||||||| || | |||| |||||||| | || | |
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| T |
24707824 |
atgaattaagtcaattatgcacttcaaaatcaccagaaccatctaaattttcaaaatgtaatattgtcaaggcaagcaaacggactcaaacacgactgca |
24707923 |
T |
|
| Q |
420 |
caatgttgtaattattgatctttaatttaatacgcaaccagttccaagaataaactttcatctcctcgtgca-nnnnnnnnngtgcctttatttgttgtg |
518 |
Q |
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|||| ||||||| | || ||| ||||||| | ||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||||| |
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| T |
24707924 |
caatattgtaatcgtgaatatttgatttaatccacaaccagttccaagaataaactttcatctcctcaagcattttttctatgtgactttttttattgtg |
24708023 |
T |
|
| Q |
519 |
aaatagtttctt-------gtctttcaaatgttccacacacatgtgaaccaaactacattgacacgcttttgagaatgctcttc |
595 |
Q |
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|||||||||||| ||||| |||||| |||||||||| | ||||||||||||| |||||||| |||||||||||||||| |
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| T |
24708024 |
aaatagtttcttgtttctagtcttccaaatgctccacacacaggagaaccaaactacactgacacgc-tttgagaatgctcttc |
24708106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 24707522 - 24707571
Alignment:
| Q |
73 |
cacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagcc |
122 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |||||||| ||||| |
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| T |
24707522 |
cacaatgaacaaatcctcaaaaacttgttgcatttgaattacacatagcc |
24707571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 13326066 - 13326127
Alignment:
| Q |
139 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
200 |
Q |
| |
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||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
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| T |
13326066 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
13326127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 13338402 - 13338463
Alignment:
| Q |
139 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
200 |
Q |
| |
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||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
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| T |
13338402 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
13338463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 32636373 - 32636327
Alignment:
| Q |
139 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
185 |
Q |
| |
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|||||||| |||||||||||||||||| |||||| |||||||||||| |
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|
| T |
32636373 |
gccctccatctcaattttgaaaccaccaaaatatcgaccacaaatct |
32636327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 5667939 - 5668000
Alignment:
| Q |
139 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
200 |
Q |
| |
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||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
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|
| T |
5667939 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
5668000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 51285975 - 51285929
Alignment:
| Q |
139 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
185 |
Q |
| |
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||||||||||||||||||||||||||| |||||| ||| |||||||| |
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| T |
51285975 |
gccctccacctcaattttgaaaccaccaaaatatagacaacaaatct |
51285929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 48491961 - 48492007
Alignment:
| Q |
139 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
185 |
Q |
| |
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|||||||| |||||||||||||| ||| |||||| |||||||||||| |
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| T |
48491961 |
gccctccatctcaattttgaaacaaccaaaatatcgaccacaaatct |
48492007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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