View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028-INSERTION-19 (Length: 443)
Name: NF0028-INSERTION-19
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028-INSERTION-19 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 1329281 - 1328982
Alignment:
| Q |
19 |
ttctaaattgttagtttcttttgaaattccacatgcttacaattggaggcattcaataaagacaaaatacca-gcttacaattggaatcgtaagacgaac |
117 |
Q |
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| T |
1329281 |
ttctaaattactggtttcttttgaagttccacagacttgcaattgcgagcattcaataaagataaaataccatgcttacaattggaatggatagaagaac |
1329182 |
T |
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| Q |
118 |
aatatgcaatagaaaagagagaatagtatggaaatagaaatggtaaaagactaaagattgaatcatatgctacatgtttctttttcataca--tcataag |
215 |
Q |
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| T |
1329181 |
attatgcaatagaaaagagagaagagcgtggaaatagaaatggtaaa-gacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacg |
1329083 |
T |
|
| Q |
216 |
tcataataaaataaaaaa-tctaacagcatgaaagctttaaacttgggatgcaaatacaactaattcttaattcggccaattggaagaagatttttctta |
314 |
Q |
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| T |
1329082 |
tcataataaactaaaaaaatctaacagtatgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttctta |
1328983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 1328914 - 1328790
Alignment:
| Q |
314 |
atcaaaataggctaatccattgtcattttatccaaattccatattatgagtgactgtatgattgtcaagaataatgtgtttatgtaaacatcgatgcagg |
413 |
Q |
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| T |
1328914 |
atcaaaacaggctaatccattgtcattt-atccaaattccatataacgagtgactgtatgattgtcaagaataatatgtttatgtaaacatttatgcagg |
1328816 |
T |
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| Q |
414 |
tgaatacaattataccacttattttt |
439 |
Q |
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| T |
1328815 |
tgaatacaattataccactttttttt |
1328790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 44188010 - 44187881
Alignment:
| Q |
36 |
cttttgaaattccacatgcttacaattggaggcattcaataaagacaaaatacca-gcttacaattggaatcgtaagacgaacaatatgcaatagaaaag |
134 |
Q |
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||||||| |||||| ||||||||| || ||| ||||||||||||||||||| | ||||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
44188010 |
cttttgatgttccacgtgcttacaactgtgggcgttcaataaagacaaaatactatgcttacaattggaatcgaaagaagaacaatatacaatagaaaag |
44187911 |
T |
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| Q |
135 |
agagaatagtatggaaatagaaatggtaaa |
164 |
Q |
| |
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| T |
44187910 |
agagaaaaacatagaaataaaaatggtaaa |
44187881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 438
Target Start/End: Complemental strand, 44187578 - 44187455
Alignment:
| Q |
314 |
atcaaaataggctaatccattgtcattttatccaaattccatattatgagtgactgtatgattgtcaagaataatgtgtttatgtaaacatcgatgcagg |
413 |
Q |
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||||||| || ||| ||| ||||||||| ||||||||| |||| ||||||| ||| |||| |||||||||||||| |||||||||||| || | |||| | |
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| T |
44187578 |
atcaaaacagtctagtccgttgtcattt-atccaaatttcataatatgagtaactatatggttgtcaagaataatatgtttatgtaaaaattgttgcaag |
44187480 |
T |
|
| Q |
414 |
tgaatacaattataccacttatttt |
438 |
Q |
| |
|
|||||||||||||||||||| |||| |
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| T |
44187479 |
tgaatacaattataccacttttttt |
44187455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 44187717 - 44187651
Alignment:
| Q |
244 |
tgaaagctttaaacttgggatgcaaatacaactaattcttaattcggccaattggaagaagattttt |
310 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
44187717 |
tgaaagctttaaacttggaatgcaagtacaactaattcttaattcagccaacaggaataagattttt |
44187651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 19161355 - 19161418
Alignment:
| Q |
341 |
ttatccaaattccatattatgagtgactgtatgattgtcaagaataatgtgtttatgtaaacat |
404 |
Q |
| |
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|||||||||||||||||| |||||||| ||| ||||||||||||| | |||| ||| |||||| |
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| T |
19161355 |
ttatccaaattccatatttggagtgactatatcattgtcaagaatattatgttcatgcaaacat |
19161418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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