View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0028-INSERTION-2 (Length: 312)

Name: NF0028-INSERTION-2
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0028-INSERTION-2
NF0028-INSERTION-2
[»] chr3 (13 HSPs)
chr3 (20-312)||(28568478-28568779)
chr3 (102-199)||(3571995-3572092)
chr3 (7-84)||(28580350-28580427)
chr3 (104-186)||(49090936-49091018)
chr3 (101-186)||(45910872-45910957)
chr3 (103-186)||(1423203-1423286)
chr3 (8-83)||(26316355-26316430)
chr3 (23-84)||(28575317-28575378)
chr3 (102-197)||(20590981-20591076)
chr3 (200-261)||(28580460-28580528)
chr3 (102-138)||(44903046-44903082)
chr3 (208-242)||(26316472-26316506)
chr3 (44-84)||(28586531-28586571)
[»] chr7 (6 HSPs)
chr7 (102-201)||(21370678-21370777)
chr7 (112-201)||(18111190-18111279)
chr7 (102-199)||(11364845-11364942)
chr7 (102-199)||(40644605-40644702)
chr7 (102-192)||(36057163-36057252)
chr7 (108-180)||(2476497-2476568)
[»] chr6 (7 HSPs)
chr6 (102-201)||(11767211-11767310)
chr6 (100-201)||(22818266-22818367)
chr6 (102-199)||(4062408-4062505)
chr6 (111-186)||(13181364-13181439)
chr6 (102-158)||(17972074-17972130)
chr6 (113-186)||(17386011-17386084)
chr6 (200-240)||(24072080-24072120)
[»] scaffold0003 (1 HSPs)
scaffold0003 (101-201)||(146658-146758)
[»] chr5 (2 HSPs)
chr5 (102-201)||(3277846-3277944)
chr5 (102-199)||(34504523-34504620)
[»] chr2 (4 HSPs)
chr2 (102-196)||(29997965-29998059)
chr2 (102-199)||(45532935-45533032)
chr2 (102-186)||(19674567-19674651)
chr2 (113-186)||(28841988-28842060)
[»] chr8 (4 HSPs)
chr8 (102-189)||(28178830-28178917)
chr8 (102-186)||(13704272-13704356)
chr8 (102-186)||(42796322-42796406)
chr8 (105-173)||(9293800-9293868)
[»] chr1 (4 HSPs)
chr1 (102-189)||(27300436-27300523)
chr1 (102-201)||(41077858-41077958)
chr1 (102-186)||(34079821-34079905)
chr1 (103-149)||(29548329-29548375)
[»] scaffold0462 (1 HSPs)
scaffold0462 (102-199)||(11538-11635)
[»] chr4 (6 HSPs)
chr4 (115-199)||(7652695-7652779)
chr4 (110-186)||(9808781-9808857)
chr4 (102-186)||(9810467-9810551)
chr4 (102-156)||(17034488-17034542)
chr4 (120-197)||(9101985-9102062)
chr4 (118-186)||(17787336-17787404)
[»] scaffold1033 (1 HSPs)
scaffold1033 (34-84)||(3086-3136)
[»] scaffold1029 (1 HSPs)
scaffold1029 (34-84)||(3086-3136)
[»] scaffold0889 (1 HSPs)
scaffold0889 (20-72)||(4358-4410)
[»] scaffold0870 (1 HSPs)
scaffold0870 (20-72)||(4562-4614)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 28568478 - 28568779
Alignment:
Q  20 aaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc---------aaattaaaacagacttgcactagtac 110  Q
    |||||||||| |  |||||||||| ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||| ||||||||||    
T  28568478 aaatttagaatagctgtatatattcgtacttcaattaaaatacttaccattctagaaattaatgctttgatagtaaattaaaacagactcgcactagtac 28568577  T
Q  111 agaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgatagctgggga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28568578 agaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgatagctgggga 28568677  T
Q  211 tattgttaagatatgaagtggtttgctatagctcaagaaagatggttatttatagctggacattgcacatacttgatatttgttagtttgagctactgaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  28568678 tattgttaagatatgaagtggtttgctatagctcaagaaagatggttatttatagctgaacattgcacatagttgatatttgttagtttgagctactgaa 28568777  T
Q  311 tg 312  Q
    ||    
T  28568778 tg 28568779  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 3572092 - 3571995
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 199  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||    
T  3572092 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatttaaaaaactgtctttg 3571995  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 28580350 - 28580427
Alignment:
Q  7 aaaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc 84  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28580350 aaaaagatattctaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctggaaattaatgc 28580427  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 49090936 - 49091018
Alignment:
Q  104 ctagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||||    
T  49090936 ctagtgcagaaaacactttttaaatcaggtaaaaaagactttttaaatcggttctccacccgacttataggtggccgatttaa 49091018  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 45910872 - 45910957
Alignment:
Q  101 gcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| |||||||||||||||||||    
T  45910872 gcactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgatttaa 45910957  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 1423203 - 1423286
Alignment:
Q  103 actagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    ||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  1423203 actagtacagaaatcactttttaaatggggtgaaaatgactttttaaatcggttgtacatccgacttataggtggccgatttaa 1423286  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 26316355 - 26316430
Alignment:
Q  8 aaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatg 83  Q
    |||| |||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||    
T  26316355 aaaatatattgtaaatctagaacaactttatatatttgtacttcaattaaaatacttaccattctataaattaatg 26316430  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 28575317 - 28575378
Alignment:
Q  23 tttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc 84  Q
    ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28575317 tttagaataactgtatatatttgtacttcagttaaaatacttaccattctagaaattaatgc 28575378  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 20590981 - 20591076
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctt 197  Q
    ||||||| |||||||||| ||||||||||||| ||  |||||||||||||||| | |  |||||| |||||||| |||||||||||||| ||||||    
T  20590981 cactagtgcagaaaacaccttttaaatcaggtgaatttgactttttaaatcgggtgatcatccgatttataggtagccgatttaaaaaattgtctt 20591076  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 28580460 - 28580528
Alignment:
Q  200 atagctggggatattgttaagatatgaa-------gtggtttgctatagctcaagaaagatggttattt 261  Q
    ||||||||||||||||||||||| ||||       |||||||||||||||||||| |||||||||||||    
T  28580460 atagctggggatattgttaagatgtgaactgtgaagtggtttgctatagctcaaggaagatggttattt 28580528  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 44903046 - 44903082
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaa 138  Q
    ||||||| |||||||||||||||||||||||||||||    
T  44903046 cactagtgcagaaaacactttttaaatcaggtaaaaa 44903082  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 26316472 - 26316506
Alignment:
Q  208 ggatattgttaagatatgaagtggtttgctatagc 242  Q
    ||||||||||||||| |||||||||||||||||||    
T  26316472 ggatattgttaagatgtgaagtggtttgctatagc 26316506  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 28586531 - 28586571
Alignment:
Q  44 tgtacttcaattaaaatacttaccattctagaaattaatgc 84  Q
    |||||| |||||||| ||||||||||||| |||||||||||    
T  28586531 tgtactccaattaaattacttaccattctggaaattaatgc 28586571  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 21370678 - 21370777
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21370678 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 21370777  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 18111190 - 18111279
Alignment:
Q  112 gaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 201  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  18111190 gaaaacactttttaaatcagatgaaaatgactttttaaatcggttcatgatccgatttataggtggccgatttaaaaaactgtctttgat 18111279  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 11364942 - 11364845
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 199  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||| ||||||||||||||| ||||||||||||||||    
T  11364942 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgatttataggtggccgatgtaaaaaactgtctttg 11364845  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 40644605 - 40644702
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 199  Q
    ||||||| ||||||| | |||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||    
T  40644605 cactagtgcagaaaatattttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatttaaaaaactgtctttg 40644702  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 36057252 - 36057163
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaact 192  Q
    |||||||||| ||||||||||||||||  ||| | | |||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  36057252 cactagtacaaaaaacactttttaaatggggtgata-tgactttttaaatcgggtcacgatccgacttataggtggccgatttaaaaaact 36057163  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 2476568 - 2476497
Alignment:
Q  108 tacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccg 180  Q
    ||||||||| |||||||||||  ||| ||||||||||||||| ||||||| | ||||||||||||||||||||    
T  2476568 tacagaaaatactttttaaatggggtgaaaatgactttttaagtcggttc-atatccgacttataggtggccg 2476497  T

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Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 11767310 - 11767211
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11767310 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 11767211  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 22818266 - 22818367
Alignment:
Q  100 tgcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 199  Q
    |||||| ||| |||||| |||| ||||||  ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  22818266 tgcactggtatagaaaatacttcttaaatggggtgaaaatgactttttaaataggttcatgatccgacttataggtggccgatttaaaaaaatgtctttg 22818365  T
Q  200 at 201  Q
    ||    
T  22818366 at 22818367  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 4062505 - 4062408
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 199  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||| ||||||||| ||||||    
T  4062505 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatgtaaaaaactatctttg 4062408  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 13181439 - 13181364
Alignment:
Q  111 agaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    |||||| ||||||||||| |||| |||| ||||||||||||||||||   |||||| |||||||||||||||||||    
T  13181439 agaaaaaactttttaaattaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgatttaa 13181364  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 17972074 - 17972130
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttca 158  Q
    |||||| ||||||||||||||||||||  ||| ||||||| ||||||||||||||||    
T  17972074 cactagcacagaaaacactttttaaatggggtgaaaatgaatttttaaatcggttca 17972130  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 17386011 - 17386084
Alignment:
Q  113 aaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||   |||||| |||||| ||| ||||||||    
T  17386011 aaaacactttttaaatggggcgaaaatgactttttaaatcggttctgtatccgatttatagatggtcgatttaa 17386084  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 24072080 - 24072120
Alignment:
Q  200 atagctggggatattgttaagatatgaagtggtttgctata 240  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  24072080 atagttggagatattgttaagatgtgaagtggtttgctata 24072120  T

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Target: scaffold0003 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 146758 - 146658
Alignment:
Q  101 gcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  146758 gcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttaaagatccgacttataggtggccgatttaaaaaactgtctttga 146659  T
Q  201 t 201  Q
    |    
T  146658 t 146658  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 3277944 - 3277846
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 201  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  3277944 cactagtgcagaaaacactttttaaatcaggtgaaaatgactttttaaatc-gttcatgatccgacttataggtggccgatttaaaaaactgtctatgat 3277846  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 34504620 - 34504523
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 199  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||    
T  34504620 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatttaaaaaactgtctttg 34504523  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 29998059 - 29997965
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtct 196  Q
    ||||||| |||||||||||||||||| | ||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  29998059 cactagtgcagaaaacactttttaaagcgggtgaaaatgactttttaaatcagttcatgatccgacttataggtggccgatttaaaaaactgtct 29997965  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 45533032 - 45532935
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 199  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||| ||||||||||||||||    
T  45533032 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatgtaaaaaactgtctttg 45532935  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 19674567 - 19674651
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| |||||||||||||||||||    
T  19674567 cactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgatttaa 19674651  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 28842060 - 28841988
Alignment:
Q  113 aaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    |||||||||||||| |  ||| ||||||||||||||| ||||||| | |||||||||||||||| |||| ||||    
T  28842060 aaaacactttttaagtggggtgaaaatgactttttaagtcggttc-atatccgacttataggtgaccgacttaa 28841988  T

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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 28178917 - 28178830
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaa 189  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||| ||||||||||||||||||||||    
T  28178917 cactagtacagaaaacactttttaaatcaggtgaaaataactttttaagtcggttctggatccgatttataggtggccgatttaaaaa 28178830  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 13704356 - 13704272
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| |||||||||||||||||||    
T  13704356 cactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgatttaa 13704272  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 42796406 - 42796322
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    ||||||| || || |||||||||||||||||| |||||||| ||||||||||||||   |||||| ||||||||||| |||||||    
T  42796406 cactagtgcaaaatacactttttaaatcaggtgaaaatgaccttttaaatcggttctgtatccgatttataggtggcagatttaa 42796322  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 9293868 - 9293800
Alignment:
Q  105 tagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttatag 173  Q
    ||||| ||||||||||||||||||  |   |||||||||||||||||||||||| ||||||| ||||||    
T  9293868 tagtatagaaaacactttttaaatgggaagaaaatgactttttaaatcggttcatgatccgatttatag 9293800  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 27300523 - 27300436
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaa 189  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||| ||||||||||||||||||||||    
T  27300523 cactagtacagaaaacactttttaaatcaggtgaaaattactttttaagtcggttctggatccgatttataggtggccgatttaaaaa 27300436  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 41077958 - 41077858
Alignment:
Q  102 cactagtacagaaaacactttttaaatcagg-taaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttga 200  Q
    |||||||||||||||||||||||||||  || | ||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||  |||||||||    
T  41077958 cactagtacagaaaacactttttaaatgggggtgaaaatgactttgtaaatccattcatgatccgacttataggtggccgatttaaaaacttgtctttga 41077859  T
Q  201 t 201  Q
    |    
T  41077858 t 41077858  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 34079905 - 34079821
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||    ||| || |||||||||||||||||||    
T  34079905 cactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttatgtatctgatttataggtggccgatttaa 34079821  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 29548329 - 29548375
Alignment:
Q  103 actagtacagaaaacactttttaaatcaggtaaaaatgactttttaa 149  Q
    ||||||| ||||||||||||||||||  ||| |||||||||||||||    
T  29548329 actagtatagaaaacactttttaaatagggtgaaaatgactttttaa 29548375  T

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Target: scaffold0462 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 11538 - 11635
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 199  Q
    ||||||| |||||||||||||||||||||||| ||  ||||||||||||| || | |  ||||||  |||||||||| ||||||||||||||||||||    
T  11538 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaattgggtgatcatccgatgtataggtggctgatttaaaaaactgtctttg 11635  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 7652695 - 7652779
Alignment:
Q  115 aacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 199  Q
    ||||||||||||||||||| ||  |||| ||||||||||| | |  ||||||||||||||||||||||||||||||||| |||||    
T  7652695 aacactttttaaatcaggtgaatttgaccttttaaatcgggtgaccatccgacttataggtggccgatttaaaaaactgcctttg 7652779  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 9808857 - 9808781
Alignment:
Q  110 cagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| |  ||||| || ||||||||||||||||    
T  9808857 cagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctatttccgatttgtaggtggccgatttaa 9808781  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 9810551 - 9810467
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 186  Q
    ||||||| |||||||||||||||||||||||| |||| || ||||||||||||||    |||||| |||||||||||||||||||    
T  9810551 cactagtgcagaaaacactttttaaatcaggtgaaaaagaatttttaaatcggttttgtatccgatttataggtggccgatttaa 9810467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 17034542 - 17034488
Alignment:
Q  102 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggtt 156  Q
    ||||||||||||||||||||||||| || | | ||||||||||||||||||||||    
T  17034542 cactagtacagaaaacactttttaagtcggatgaaaatgactttttaaatcggtt 17034488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 9101985 - 9102062
Alignment:
Q  120 tttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctt 197  Q
    |||||||||||||| ||  |||||||||||||||| | |  ||| ||  |||||||||||||||||||||||||||||    
T  9101985 tttttaaatcaggtgaatttgactttttaaatcgggtgatcatctgatgtataggtggccgatttaaaaaactgtctt 9102062  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 17787336 - 17787404
Alignment:
Q  118 actttttaaatcaggtaaaaatgactttttaaatcggttcaag-atccgacttataggtggccgatttaa 186  Q
    |||||||||||  ||| |||||||||||||||||| || || | ||||||||||||||||||||||||||    
T  17787336 actttttaaatggggtgaaaatgactttttaaatcagt-catgtatccgacttataggtggccgatttaa 17787404  T

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Target: scaffold1033 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 3136 - 3086
Alignment:
Q  34 tgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc 84  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3136 tgtatatatttgtacttcaattaaaatacttaccattctggaaattaatgc 3086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 3136 - 3086
Alignment:
Q  34 tgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc 84  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3136 tgtatatatttgtacttcaattaaaatacttaccattctggaaattaatgc 3086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0889 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 4410 - 4358
Alignment:
Q  20 aaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattct 72  Q
    |||||||||| || |||||||||| ||| ||||||||||||||||||||||||    
T  4410 aaatttagaataactgtatatattggtatttcaattaaaatacttaccattct 4358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0870 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 4614 - 4562
Alignment:
Q  20 aaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattct 72  Q
    |||||||||| || |||||||||| ||| ||||||||||||||||||||||||    
T  4614 aaatttagaataactgtatatattggtatttcaattaaaatacttaccattct 4562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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