View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0028-INSERTION-4 (Length: 223)
Name: NF0028-INSERTION-4
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028-INSERTION-4 |
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| [»] scaffold0164 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: scaffold0164 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 7831 - 8050
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaacttttgatatttttatcatgttcaataattaattggtgcagttttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
7831 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaatttttgatatttttgtcacgttcaataattaattggtgcagttttt |
7930 |
T |
|
| Q |
108 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttc-aagtgccagtgactgt---ta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |
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| T |
7931 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttcaaagtgcaagtgactgtttgta |
8030 |
T |
|
| Q |
204 |
tatgagtatatgacaatgcc |
223 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
8031 |
tatgagtatatgacaatgcc |
8050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 15712 - 15931
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaacttttgatatttttatcatgttcaataattaattggtgcagttttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
15712 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaaattttgatatttttgtcacgttcaataattaattggtgcagttttt |
15811 |
T |
|
| Q |
108 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttc-aagtgccagtgactgt---ta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||||| || |
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|
| T |
15812 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttaaggcaggaaagagaaaaacccaacatctttttcaaagtgcaagtgactgtttgta |
15911 |
T |
|
| Q |
204 |
tatgagtatatgacaatgcc |
223 |
Q |
| |
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|||||||||||||||||||| |
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| T |
15912 |
tatgagtatatgacaatgcc |
15931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 18808354 - 18808573
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaacttttgatatttttatcatgttcaataattaattggtgcagttttt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||| ||||||||||||||||||||||| |
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|
| T |
18808354 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactcttgttaatttttgatatttttgtcacgtttaataattaattggtgcagttttt |
18808453 |
T |
|
| Q |
108 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttc-aagtgccagtgactgt---ta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |
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| T |
18808454 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttcaaagtgcaagtgactgtttgta |
18808553 |
T |
|
| Q |
204 |
tatgagtatatgacaatgcc |
223 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
18808554 |
tatgagtatatgacaatgcc |
18808573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 24071252 - 24071471
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaacttttgatatttttatcatgttcaataattaattggtgcagttttt |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
24071252 |
aataaaggtaaaacactctttaggtgtagcctattttatctacactctttttaatttttgatatttttgtcacgttcaataattaattggtacagttttt |
24071351 |
T |
|
| Q |
108 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttc-aagtgccagtgactgt---ta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |
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|
| T |
24071352 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttcaaagtgcaagtgactgtttgta |
24071451 |
T |
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| Q |
204 |
tatgagtatatgacaatgcc |
223 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
24071452 |
tatgagtatatgacaatgcc |
24071471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 44484285 - 44484068
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaacttttgatatttttatcatgttcaataattaattggtgcagttttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||| ||||| |
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|
| T |
44484285 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaatttttgatatttttgttacgttcaataattaattggtgcaattttt |
44484186 |
T |
|
| Q |
108 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttc-aagtgccagtgactgt---ta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | | || |
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| T |
44484185 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttcaaagtgcaagtgattatttgta |
44484086 |
T |
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| Q |
204 |
tatgagtatatgacaatg |
221 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
44484085 |
tatgagtatatgacaatg |
44484068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 40016377 - 40016414
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctatttta |
45 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
40016377 |
aataaaggtaaaacattcttttggtgtagcctacttta |
40016414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 18565151 - 18565370
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaacttttgatatttttatcatgttcaataattaattggtgcagttttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||| |
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| T |
18565151 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaatttttaatatttttgtcacgttcaataattaattggtgcagttttt |
18565250 |
T |
|
| Q |
108 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttc-aagtgccagtgactgt---ta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| ||||||||| || |
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|
| T |
18565251 |
cttttcaaatttgttcttatgttcaccaaagtttgttacactttgaggcagaaaagaggaaaacccaacatctttttcaaagtgcaagtgactgtttgta |
18565350 |
T |
|
| Q |
204 |
tatgagtatatgacaatgcc |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18565351 |
tatgagtatatgacaatgcc |
18565370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 12317045 - 12316951
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaacttttgatatttttatcatgttcaataattaattggtgcag |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12317045 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaacttttgatatttttatcatgttcaataattaattggtgcag |
12316951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 12316954 - 12316882
Alignment:
| Q |
155 |
gcaggaaagaggaaaacccaacatctttttc-aagtgccagtgactgtt---atatgagtatatgacaatgcc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| |
|
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| T |
12316954 |
gcaggaaagaggaaaacccaacatctttttcaaagtgcaagtgactgtttgcatatgagtatatgacaatgcc |
12316882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 19832851 - 19833070
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctattttatctacactctttttaacttttgatatttttatcatgttcaataattaattggtgcagttttt |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
19832851 |
aataaaggtaaaacactctttaggtgtagcctattttatctacactctttttaatttttgatatttttgtcacgttcaataattaattggtacagttttt |
19832950 |
T |
|
| Q |
108 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttc-aagtgccagtgactgt---ta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |
|
|
| T |
19832951 |
cttttcaaatttgttcttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatctttttcaaagtgcaagtgactgtttata |
19833050 |
T |
|
| Q |
204 |
tatgagtatatgacaatgcc |
223 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
19833051 |
tatgagtttatgacaatgcc |
19833070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 44197119 - 44197223
Alignment:
| Q |
81 |
gttcaataattaattggtgcagtttttcttttcaaatttgtt-cttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatc |
179 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||| |||||| |
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|
| T |
44197119 |
gttcactaattaattggtgcagattttcttttcaaatttgtttcttatattcaccaaagtttgttaccgtttgaggcatgaaagaggaaaacaaaacatc |
44197218 |
T |
|
| Q |
180 |
ttttt |
184 |
Q |
| |
|
||||| |
|
|
| T |
44197219 |
ttttt |
44197223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 19190958 - 19191065
Alignment:
| Q |
81 |
gttcaataattaattggtgcagtttttcttttcaaatttgtt-cttatgttcaccaaagtttgttacagtttgaggcaggaaagaggaaaacccaacatc |
179 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| | | ||||||||| |||||| |
|
|
| T |
19190958 |
gttcactaattaattggtgcattttttcttttcaaatttgtttcttatgttcacaaaagtttgttactgtttgaggcagtagataggaaaaccaaacatc |
19191057 |
T |
|
| Q |
180 |
tttttcaa |
187 |
Q |
| |
|
|||||||| |
|
|
| T |
19191058 |
tttttcaa |
19191065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 1681 - 1645
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctatttt |
44 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
1681 |
aataaaggcaaaacacacttttggtgtagcctatttt |
1645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 7192 - 7156
Alignment:
| Q |
8 |
aataaaggtaaaacactcttttggtgtagcctatttt |
44 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
7192 |
aataaaggcaaaacacacttttggtgtagcctatttt |
7156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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