View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028-INSERTION-6 (Length: 239)
Name: NF0028-INSERTION-6
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028-INSERTION-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 39378730 - 39378498
Alignment:
| Q |
7 |
aaattccgagtaacgcaaccgttgatctatcattcaacaatctcactggtgaaataccagagtcccctgttttgttgaaccaggaaacaaaagtgttttc |
106 |
Q |
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| T |
39378730 |
aaattcccagtaacgcaaccgttgatctatcattcaacaatctcactggcgaaataccggagtcccctgttttgttgaaccaggaaacaaaagtgttttc |
39378631 |
T |
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| Q |
107 |
tggtaatagtgatctatgtggtgaaccaatgaaaaatccttgttctattccttcttctccttcttctaatcctcaaggttcttctcctcctgcaatcgcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39378630 |
tggtaatagtgatctatgtggtgaaccaatgaaaaatccttgttctattccttcttctccttcttctaatcctcaaggttcttctcctcctgcactcgcc |
39378531 |
T |
|
| Q |
207 |
gcaatgccgaagaattttgataatgattctcct |
239 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39378530 |
gcaatgccgaagaattttgataatgattctcct |
39378498 |
T |
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