View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028-INSERTION-8 (Length: 357)
Name: NF0028-INSERTION-8
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028-INSERTION-8 |
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| [»] scaffold0470 (2 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 2273 - 2093
Alignment:
| Q |
20 |
ctaataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2273 |
ctaataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttt |
2174 |
T |
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| Q |
120 |
tatgttttcctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg |
200 |
Q |
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| T |
2173 |
tatgttttcctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg |
2093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 2004 - 1936
Alignment:
| Q |
289 |
gacgcgtttgattcaccacatagtaaataataaatagaatagtacgagacaatacataaatgtacaaga |
357 |
Q |
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| T |
2004 |
gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacataaatgtacaaga |
1936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 6612985 - 6612805
Alignment:
| Q |
20 |
ctaataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttt |
119 |
Q |
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| T |
6612985 |
ctaataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttt |
6612886 |
T |
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| Q |
120 |
tatgttttcctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg |
200 |
Q |
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| T |
6612885 |
tatgttttcctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg |
6612805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 6660518 - 6660429
Alignment:
| Q |
21 |
taataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaag |
110 |
Q |
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| T |
6660518 |
taataaattgatttaaaaagtataatagaaaagagataaaactagtattaactaaaatgacatttgtgttgaagtcaattgcatggaaag |
6660429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 6740920 - 6740831
Alignment:
| Q |
21 |
taataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaag |
110 |
Q |
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| T |
6740920 |
taataaattgatttaaaaagtataatagaaaagagataaaactagtattaactaaaatgacatttgtgttgaagtcaattgcatggaaag |
6740831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 6758427 - 6758338
Alignment:
| Q |
21 |
taataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaag |
110 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
6758427 |
taataaattgatttaaaaagtataatagaaaagagataaaactggtattaactaaaatgacttttgtgttgaagtcaattgcatggaaag |
6758338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 6612716 - 6612648
Alignment:
| Q |
289 |
gacgcgtttgattcaccacatagtaaataataaatagaatagtacgagacaatacataaatgtacaaga |
357 |
Q |
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| T |
6612716 |
gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacataaatgtacaaga |
6612648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 6582263 - 6582170
Alignment:
| Q |
21 |
taataaattgatttaaaatgtataatagaaaagagataaaatta----ttattaactaaaatgacatttgtgttgaagttaattgcatggaaag |
110 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6582263 |
taataaattgatttaaaaagtataatagaaaagagataaaactagtatatattaactaaaatgacatttgtgttgaagtcaattgcatggaaag |
6582170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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