View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Ase12 (Length: 581)
Name: NF0028Ase12
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Ase12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Original strand, 47688846 - 47689440
Alignment:
| Q |
8 |
atgtggtgctcacatcttcagccgatgtagctgcaattgcgagtggtgggtggtccaaatgatcattgtgcatatgcagaggaatgctttgatgagtgaa |
107 |
Q |
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| T |
47688846 |
atgtggtgctcacatcttcagccgatgtagctgcaattgtgagtggtgggtggtccaaatgatcattgtgcatatgcagaggaatgctttgatgagtgaa |
47688945 |
T |
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| Q |
108 |
attgttggagtttttacctgtgaggtgttgaactaatgatctgaactcagaagcatggcaatcccttaacagtataggattagatatataggttacctta |
207 |
Q |
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| T |
47688946 |
attgttggagtttttacctgtgaggtgttgaactaatgatctgaactcagaagcatggcaatcccttaacagtataggattagatatataggttacctta |
47689045 |
T |
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| Q |
208 |
actgttttctttagtgttttatgtattgccttttggtgatgtttagaatcattgctagagagttttcccatttttgcaacaaatgcgtataaacaagtaa |
307 |
Q |
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| T |
47689046 |
actgttttctttagtgttttatgtattgccttttggtgatgtttagaatcattgctagagagttttcccatttttgcaacaaaggcgtataaacaagtaa |
47689145 |
T |
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| Q |
308 |
aacacttcaactataaactatgtataatgtattgtctaatgaggttttttggcacatattaaagggtttgtaatatcgcta------------------- |
388 |
Q |
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| T |
47689146 |
aacacttcaactataaactatgtataatgtattgtctaatgaggttttttggcacatattaaagggtttgtaatatcgctaaagaatggacaacactcta |
47689245 |
T |
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| Q |
389 |
--tatagatacatgaatgagcttaaaaaatgaatttcacaatcatggtaaagaaggagagcttccgagaaggaaggtcacttggaaaaatgacaaatttg |
486 |
Q |
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| T |
47689246 |
tttatagatacatgaatgagcttaaaaaatgaatttcacaatcatggtaaagaaggagagcttccgaaaaggaaggtcacttgggaaaatgacaaatttg |
47689345 |
T |
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| Q |
487 |
gaaaaattgggaggatcattgacttgaaaattgttgtcacaaccaaatgagacattacgcactcattacagttactaattttctactacatatat |
581 |
Q |
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| T |
47689346 |
gaaaaattgggaggatcattgacttgaaaattgttgtcacaaccaaatgagacattacgcattcattatagttactaattttctactacatatat |
47689440 |
T |
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