View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0028Ase15 (Length: 696)
Name: NF0028Ase15
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Ase15 |
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Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 13 - 689
Target Start/End: Complemental strand, 8696375 - 8695701
Alignment:
| Q |
13 |
tcttgcaagggtaccctctaccctgatttatgcattcgttgccttaacaagttttccaaatcaaccataaatggacctcaacacttagcacatgttgcct |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8696375 |
tcttgcaatggtaccctctaccctgatttatgcattcgttgcctaaacaagttttccaaatcaaccataaatggacctcaacacttagcacatgttgcct |
8696276 |
T |
|
| Q |
113 |
tattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaaaaggatgtatct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8696275 |
tattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggccaaggaactcaaagctattgatcacaacaacaaaaggatgtatct |
8696176 |
T |
|
| Q |
213 |
aaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8696175 |
aaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacacaatcatc |
8696076 |
T |
|
| Q |
313 |
aatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtacaatcattccctggtcatagga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
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|
| T |
8696075 |
aatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaa |
8695976 |
T |
|
| Q |
413 |
tgagcaaaagagttgcgacgattaagattaaggcgaagaatgttgcagaagttaccagtaacgcactcgctttgtttcatagttatgctactaggtatca |
512 |
Q |
| |
|
||||||| || ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| |
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|
| T |
8695975 |
tgagcaagagggttgcgacgattaaggtgaaggcgaagaatgttgcagaagttactagtaacgcacttgctttgtttcaaagttatgctacaaggtatcg |
8695876 |
T |
|
| Q |
513 |
gcaagaagcagctagaacttccaagaagccatgaaaatctttaatcatactttttgtcaccctttggtttgtccatgtatatgatacatgggttttttct |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
8695875 |
acaagaagcagctagaacttccaagaagccatgaaaatctttaatcatactttttgtcacccttt-gtttgtccatgtatatgatacat-ggttttttct |
8695778 |
T |
|
| Q |
613 |
ttgggtggttttgcatcgttatttattaagtgcaatattgatgtatgaatgtaagattaactccattactatctatg |
689 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8695777 |
ttgggtggttttgcaacgttatttattaagtgcaatattgatgtatgaatgtaagattaactccattactatctatg |
8695701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 638
Target Start/End: Original strand, 8692891 - 8693520
Alignment:
| Q |
13 |
tcttgcaagggtaccctctaccctgatttatgcattcgttgccttaacaagttttccaaatcaaccataaatggacctcaacacttagcacatgttgcct |
112 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8692891 |
tcttgcaatggtacactctaccctgatttatgcattcgttgcctaaacaagttttccaaatcaaacataaatggacctcaacacttagcacatgttgcct |
8692990 |
T |
|
| Q |
113 |
tattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaaaaggatgtatct |
212 |
Q |
| |
|
||| || |||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
8692991 |
tatccgtgagcttctctagagcattgcaaacaagagggtaccttttgaatgtggccaaggaactcaaagctattgatcacaacaacaaaaggatgtacct |
8693090 |
T |
|
| Q |
213 |
aaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
8693091 |
aaccgtgcaagattgtgtgaatcaaatcaatgatagtgttgatcaacttagccaagccatcaaagaactaaaaaggttgaataaatttaacacaatcatc |
8693190 |
T |
|
| Q |
313 |
aatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtacaatcattccctggtcatagga |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
8693191 |
aatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgatgctagtagttgtgtgcaatcgttccctggtcatagaa |
8693290 |
T |
|
| Q |
413 |
tgagcaaaagagttgcgacgattaagattaaggcgaagaatgttgcagaagttaccagtaacgcactcgctttgtttcatagttatgctactaggtatca |
512 |
Q |
| |
|
||||||| || ||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
8693291 |
tgagcaatagtgttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcg |
8693390 |
T |
|
| Q |
513 |
gcaagaag---cagctagaacttccaagaagccatgaaaatcttt-aatcatac---tttttgtcaccctttggtttgtccatgtatatgatacatgggt |
605 |
Q |
| |
|
|||| || | ||||||||||| ||||||||||||||| |||| |||||||| ||||||||||| || |||||| |||||||||||||||| || |
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| T |
8693391 |
acaagcagccacggctagaacttcgaagaagccatgaaaaactttaaatcataccttattttgtcacccctt-gtttgttcatgtatatgatacat--gt |
8693487 |
T |
|
| Q |
606 |
tttttctttgggtggttttgcatcgttatttat |
638 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
8693488 |
tttttctttgggtggttttacatcgttatttat |
8693520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 13 - 637
Target Start/End: Complemental strand, 8687806 - 8687182
Alignment:
| Q |
13 |
tcttgcaagggtaccctctaccctgatttatgcattcgttgccttaacaagttttccaaatcaaccataaatggacctcaacacttagcacatgttgcct |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8687806 |
tcttgcaatggtaccctctaccctgatttgtgcattcgttgccttaagaagttttccaaatcaaccataaatggacctcaacacttagcaaatgttgcct |
8687707 |
T |
|
| Q |
113 |
tattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaaaaggatgtatct |
212 |
Q |
| |
|
||| || ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
8687706 |
tatccgtgagcctctcgagagcattgcaaacaagaggataccttttgaatgcggcaaaggaactcaaagctattgatcacaacaacaagaggatgtacct |
8687607 |
T |
|
| Q |
213 |
aaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
8687606 |
aaccgtgcaagattgtgtgaatcaaattaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaataaatttaacacaatcatc |
8687507 |
T |
|
| Q |
313 |
aatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtacaatcattccctggtcatagga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
8687506 |
aatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaa |
8687407 |
T |
|
| Q |
413 |
tgagcaaaagagttgcgacgattaagattaaggcgaagaatgttgcagaagttaccagtaacgcactcgctttgtttcatagttatgctactaggtatca |
512 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
8687406 |
tgagcaaaagagttgcgacgattaaggtgaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttatgctactaggtatcg |
8687307 |
T |
|
| Q |
513 |
gcaagaagcagctagaacttccaagaagccatgaaaatctt-taatcatac---tttttgtcaccctttggtttgtccatgtatatgatacatgggtttt |
608 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||| ||| |||||||| |||| |||||| || |||||||||||||||| | |||| ||||| |
|
|
| T |
8687306 |
acaagcagcggctagaaccgtcaagaagccatgaaaaacttgaaatcataccttattttatcacccctt-gtttgtccatgtatat-acacat--gtttt |
8687211 |
T |
|
| Q |
609 |
ttctttgggtggttttgcatcgttattta |
637 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |
|
|
| T |
8687210 |
ttctttgggtggttttacatagttattta |
8687182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 13 - 689
Target Start/End: Original strand, 8674660 - 8675345
Alignment:
| Q |
13 |
tcttgcaagggtaccctctaccctgatttatgcattcgttgccttaacaagttttccaaatcaaccataaatggacctcaacacttagcacatgttgcct |
112 |
Q |
| |
|
|||||||| ||||||||||||||| | |||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
8674660 |
tcttgcaacggtaccctctaccctactctatgtattcgttgccttaacaaattttccagttcaaccataaatggacctcaacacttagctcaagttgcct |
8674759 |
T |
|
| Q |
113 |
tattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaaaaggatgtatct |
212 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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|
| T |
8674760 |
tatccgttagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaagaggatgtacct |
8674859 |
T |
|
| Q |
213 |
aaccgtgcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatc |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8674860 |
aaccgttcaagattgtgtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatc |
8674959 |
T |
|
| Q |
313 |
aatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtacaatcattccctggtcatagga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
8674960 |
aatgataaagtgttgtggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaa |
8675059 |
T |
|
| Q |
413 |
tgagcaaaagagttgcgacgattaagattaaggcgaagaatgttgcagaagttaccagtaacgcactcgctttgtttcatagttatgctactaggtatca |
512 |
Q |
| |
|
||||||| || ||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
8675060 |
tgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcg |
8675159 |
T |
|
| Q |
513 |
gcaagaag---cagctagaacttccaagaagccatgaaaatcttt--aatcat-act--ttttgtcaccctttggtttgtccatgtatatgatacatggg |
604 |
Q |
| |
|
|||| || | ||||||||| |||||||||||||||| |||| |||||| ||| |||| |||||| || |||||||||||||||||||| | | |
|
|
| T |
8675160 |
acaagcagccacggctagaactgtcaagaagccatgaaaaacttttaaatcataacttattttatcacccctt-gtttgtccatgtatatgatatacatg |
8675258 |
T |
|
| Q |
605 |
ttttttctttgggtggttttgcatcgttatttattaagtgcaatattgatg--tatgaatgtaagattaactccattactatctatg |
689 |
Q |
| |
|
||||||||| |||||||||| ||| ||| ||||| ||| |||||||||| |||||||||| |||||||| ||||| ||| |||| |
|
|
| T |
8675259 |
ttttttcttcgggtggttttacatagttctttatctagtttaatattgatgtatatgaatgtatgattaacttcattattatttatg |
8675345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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