View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Ase16 (Length: 317)
Name: NF0028Ase16
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Ase16 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 43246503 - 43246807
Alignment:
| Q |
9 |
ggaagtggtttgttccttggagagagtttggttcttcgtttttagaagatgttgctgatgatagtgtaatagc---caaagccattagcaaggtcacaag |
105 |
Q |
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| T |
43246503 |
ggaagtggcttgttccttggagagagtttggttcttcgtttttagaagatgttgctgatgatagtgtaatagcgcccaaagccattagcaaggtcacaag |
43246602 |
T |
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| Q |
106 |
gaaaagggtcttgatgaacttcattgtttttgtgtttaaagctatgtatgagaggtaaaacaaagttggatatgantaaaagtagtacttgttggatatg |
205 |
Q |
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| T |
43246603 |
gaaaagggtcttgatgaacttcattgtttttgtgtttaaagctatgtatgagaggtaaaacaaagttggatatgagtaaaagtagtacttgttggatatg |
43246702 |
T |
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| Q |
206 |
tcttgaatgagaaggataagaanaaatggnaggtatttatagaagagagggaggtctatggataatatcataaatttttcacataaaatgcaatttcctg |
305 |
Q |
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| T |
43246703 |
ttttgaatgagaaggataagaagaaatggtaggtatttatagaagagagggaggtcgatggataatatcataaatttttcatatagaatgcaatttcatg |
43246802 |
T |
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| Q |
306 |
cntgg |
310 |
Q |
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| T |
43246803 |
catgg |
43246807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 8541216 - 8541395
Alignment:
| Q |
31 |
agagtttggttcttcgtttttagaagatgttgctgatgatagtgtaatagccaaagccattagcaaggtcacaaggaaaagggtcttgatgaacttcatt |
130 |
Q |
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| T |
8541216 |
agagtttggttcatcgtttaaggaagatgttgctgatgatagtgtaatggccaaaaccattagcaaggccagaagaaaaagggtattgatgaacttcat- |
8541314 |
T |
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| Q |
131 |
gtttttgtgtttaaagctatgtatgagaggtaaaacaaagttggatatgantaaaagtagtacttgttggatatgtcttgaatgagaag |
219 |
Q |
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| T |
8541315 |
-tttttgtgtttaaagc----taggagaggtaaaagaaagttggaaatgagtaa---taatacttggtagatatgttttgaatgagaag |
8541395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 8551687 - 8551811
Alignment:
| Q |
9 |
ggaagtggtttgttccttggag---agagtttggttcttcgtttttagaagatgttgctgatgatagtgtaatagccaaagccattagcaaggtcacaag |
105 |
Q |
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|||||||| |||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
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| T |
8551687 |
ggaagtggcttgttccttgaagtgaagagtttggttcttcgttttcggaagatgttgctgatgatagtgtaatggccaaagccattagcaaggccagaag |
8551786 |
T |
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| Q |
106 |
gaaaagggtcttgatgaacttcatt |
130 |
Q |
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| T |
8551787 |
aaaaagggtattgatgaacttcatt |
8551811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 8532921 - 8533048
Alignment:
| Q |
9 |
ggaagtggtttgttccttggag---agagtttggttcttcgtttttagaagatgttgctgatgatagtgtaatagccaaagcc---attagcaaggtcac |
102 |
Q |
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|||||||| |||||||||| || |||||||||||||||||||| |||||||| |||||||||| |||||| | ||||||| |||| ||||||||| |
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| T |
8532921 |
ggaagtggcttgttccttgaagtgaagagtttggttcttcgttttcagaagatgatgctgatgatggtgtaacggtcaaagccataattaacaaggtcac |
8533020 |
T |
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| Q |
103 |
aaggaaaagggtcttgatgaacttcatt |
130 |
Q |
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||||||||| ||||| ||| |||||||| |
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| T |
8533021 |
aaggaaaagagtcttcatggacttcatt |
8533048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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