View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Ase18 (Length: 737)
Name: NF0028Ase18
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Ase18 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 285 - 626
Target Start/End: Original strand, 8695563 - 8695904
Alignment:
| Q |
285 |
taatgtggccttactggattaccactcataaccacctaaaaccccgctaccaaacacacgatcttcaaattatttaaccattaccaaccaacgaaatact |
384 |
Q |
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| T |
8695563 |
taatgtggccttactagattaccactcataaccacctaaaaccccgctaccaaacacacggtcttcaaattatttaaccattaccaaccaacgaaatact |
8695662 |
T |
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| Q |
385 |
caacaacaaaatatatgtagcataaatattacttttaacatagatagtaatggagttaatcttacattcatacatcaatattgcacttaataaataacga |
484 |
Q |
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| T |
8695663 |
caacaacaaaatataggtagcataaatattactgttaacatagatagtaatggagttaatcttacattcatacatcaatattgcacttaataaataacgt |
8695762 |
T |
|
| Q |
485 |
tgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaaaaagtatgattaaagattttcatggcttcttggaagttct |
584 |
Q |
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| T |
8695763 |
tgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaaaaagtatgattaaagattttcatggcttcttggaagttct |
8695862 |
T |
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| Q |
585 |
agctgcttcttgctgatacctagtagcataactatgaaacaa |
626 |
Q |
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| T |
8695863 |
agctgcttcttgtcgataccttgtagcataactttgaaacaa |
8695904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 474 - 626
Target Start/End: Complemental strand, 8693520 - 8693362
Alignment:
| Q |
474 |
ataaataacgatgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaa---aaagtatga-ttaaagattttcatgg |
569 |
Q |
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| T |
8693520 |
ataaataacgatgtaaaaccacccaaagaaaaaac-atgtatcatatacatgaacaaacaaggggtgacaaaataaggtatgatttaaagtttttcatgg |
8693422 |
T |
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| Q |
570 |
cttcttggaagttctagc---tgcttcttgctgatacctagtagcataactatgaaacaa |
626 |
Q |
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| T |
8693421 |
cttcttcgaagttctagccgtggctgcttgtcgataccttgtagcataactttgaaacaa |
8693362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 419 - 626
Target Start/End: Complemental strand, 8675349 - 8675131
Alignment:
| Q |
419 |
ttaacatagatagtaatggagttaatcttacattcata--catcaatattgcacttaataaataacgatgcaaaaccacccaaagaaaaaaccatgtat- |
515 |
Q |
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| T |
8675349 |
ttaacataaataataatgaagttaatcatacattcatatacatcaatattaaactagataaagaactatgtaaaaccacccgaagaaaaaac-atgtata |
8675251 |
T |
|
| Q |
516 |
-catatacatggacaaacaaagggtgacaaaa--agt-atgatt--aaagattttcatggcttcttggaagttctagc---tgcttcttgctgataccta |
606 |
Q |
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| T |
8675250 |
tcatatacatggacaaacaaggggtgataaaataagttatgatttaaaagtttttcatggcttcttgacagttctagccgtggctgcttgtcgatacctt |
8675151 |
T |
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| Q |
607 |
gtagcataactatgaaacaa |
626 |
Q |
| |
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| T |
8675150 |
gtagcataactttgaaacaa |
8675131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 626
Target Start/End: Original strand, 8687182 - 8687335
Alignment:
| Q |
475 |
taaataacgatgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaaaaa---gtatgatta-aagattttcatggc |
570 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| |||| | |||||||||||||||||| |||||| |||| |||||||| ||| |||||||||| |
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| T |
8687182 |
taaataactatgtaaaaccacccaaagaaaaaac-atgtgt-atatacatggacaaacaaggggtgataaaataaggtatgatttcaagtttttcatggc |
8687279 |
T |
|
| Q |
571 |
ttcttggaagttctagctgcttcttgctgatacctagtagcataactatgaaacaa |
626 |
Q |
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|||||| |||||||| ||| |||| ||||||||||||||||||| |||||||| |
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| T |
8687280 |
ttcttgacggttctagccgctgcttgtcgatacctagtagcataactttgaaacaa |
8687335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 3929699 - 3929538
Alignment:
| Q |
9 |
cactcacataataagatgtggaagatttgtnnnnnnnntaaattgaaagaatataatttttaggtccagaactacctgatgtaactagctagcatgacta |
108 |
Q |
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| T |
3929699 |
cactcacataataagatgtggaagatttgtaaaaaaaataaattgaaagaatataatttttaggtccagaactacctgatgtaactagctagcatgacta |
3929600 |
T |
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| Q |
109 |
aaatttatatatatctttagcactcctcaaaaccatcattcgattcaatattataaaaattat |
171 |
Q |
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| T |
3929599 |
aaatttatatatatctttagcactcctcaaaaccatcattcgattcaata-tataaaaattat |
3929538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 3929504 - 3929419
Alignment:
| Q |
175 |
ttcaaccagcataatctaacataataatacaagaatgataatatattatattttattgccatgaatacgatagtataaataaatta |
260 |
Q |
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| T |
3929504 |
ttcaaccaacataatctaacataataatacaagaatgataatatattgtattttattgccatgaatacgatagtataaataaatta |
3929419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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