View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Ase27 (Length: 383)
Name: NF0028Ase27
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Ase27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 2802558 - 2802186
Alignment:
| Q |
11 |
ccagcttcaaagaacagcaaaactgtactatatcagaactctttgcctcagaaactgatcatatgccctcaccaaacagcttgaactcaatacattgtga |
110 |
Q |
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| T |
2802558 |
ccagcttcaaagaacagcaaaactgtactataacagaactctttgcctcagaaactgatcatatgccctcaccaaactgcttgaactcaatacattgtga |
2802459 |
T |
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| Q |
111 |
agccatttctctcatacttcaggtaaaaattaggcctacataataaattttttcaattcctcttctttcatttcacatatgctacattttatcatgtttc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2802458 |
agccatttctctcatacttcaggtaaaaattaggcctacataatacattttttcaattcctcttctttcatttcacatatgctacgttttatcatgtttc |
2802359 |
T |
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| Q |
211 |
ttcaggtccagcattcttgcaatttggatccatttatagcttatcttgctataaattacttgcaccgtttcatgtcgaaacaagaatttccggtaagcac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802358 |
ttcaggtccagcattcttgcaatttggatccatttatagcttatcttgctataaattacttgcaccgtttcatgtcgaaacaagaatttccggtaagcac |
2802259 |
T |
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| Q |
311 |
atatctaatgattccactatatgcttatttctacttcatagcaaaatgatgaaaactttgaacaattgcacat |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802258 |
atatctaatgattccactatatgcttatttctacttcatagcaaaatgatgaaaactttgaacaattgcacat |
2802186 |
T |
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