View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Ase6 (Length: 689)
Name: NF0028Ase6
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Ase6 |
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Alignment Details
Target: chr2 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 7 - 675
Target Start/End: Complemental strand, 12264555 - 12263885
Alignment:
| Q |
7 |
aggactatgttgtcttggtgttttcgaagtgcaagggaagtggacgtaatcccagattatgaggtgaatgaatcagaataaatactttgtatcaactctt |
106 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12264555 |
aggactatgttgtcttagtgttttcgaagtgcaagggaagtggacgtaatcccagattatgaggtgaatgaatcagaataaatactttgtatcaactctt |
12264456 |
T |
|
| Q |
107 |
atctttgtattttacgctgctatccattttccagtatcataaaaggagaataagaaagagaccaacacagttcaaaccttcatttattgtgtttttctca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
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| T |
12264455 |
atctttgtattttacgctgctatccattttccagtatcataaaaggagaataagaaagagaccaacacaattcaaacctttatttgttgtgtttttctca |
12264356 |
T |
|
| Q |
207 |
tcttcacaaattcgttagagttacttagatcagggaaaattatttgtaccttagagtgctattttctagggtttttacaatcagagtaaactgatataac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12264355 |
ccttcacaaattcgttagagttacttagatcagggaaaattatttgtaccttagagtgctattttctagggtttttacaattagagtaaactgatataac |
12264256 |
T |
|
| Q |
307 |
tataaaaataagcacactcaagtaaattttcatttgaatccctaagaaaattttaaaatcaaatttagtctcggagaaaaataaaagcattgtttaagag |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12264255 |
tataaaaataagcacactcaagtaaattttcatttgaatccctaagaaaattttaaaatcaaatttagtctccgagaaaaataaaagcattgtttaagag |
12264156 |
T |
|
| Q |
407 |
gaataaaagcattcttttaagtcattgnnnnnnnnncaaatcagaataaattagttcgtaccttttttacacattatttgtttgatgaagtataggt--n |
504 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12264155 |
gaataaaagcattcttttaagtcattg-aaaaaaaacaaatcagaataaattagttcgtaccttttttacacattatttgtttgatgaagtataggtaaa |
12264057 |
T |
|
| Q |
505 |
nnnnnnnnnnnnnnnnnnngaagaaattattaagtagtttagtatgagaaaattttagacaatccggattagctcactacctatgagtctaancatgtca |
604 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
12264056 |
aaaaaaaagtaaataaaaagaagaaattattaagtagtttagtatgagaaaattttagacaatccggattagttcactacctatgagtctaaacatgtca |
12263957 |
T |
|
| Q |
605 |
atatcataggcatattgaaatggacgaaagaaattatttacgtactctcc-aatcttcacgcattcnccaaa |
675 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
12263956 |
atatcataggcatattgaaatggacgaaagaaattatttacgtactctccaaatcttcacgcattctccaaa |
12263885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 25069914 - 25069872
Alignment:
| Q |
32 |
gaagtgcaagggaagtggacgtaatcccagattatgaggtgaa |
74 |
Q |
| |
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|||||||||||||| ||||||||| |||| ||||||||||||| |
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|
| T |
25069914 |
gaagtgcaagggaactggacgtaaccccatattatgaggtgaa |
25069872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 594 - 684
Target Start/End: Complemental strand, 27233294 - 27233202
Alignment:
| Q |
594 |
taancatgtcaatatcataggcatattgaaatggacgaaagaaattatttacgtactctcc-aatcttcacgcattcncc-aaattggatcaa |
684 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||| || |||||||||||| |
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| T |
27233294 |
taaacatgtcaatatcataggcatattgaaatggacgagagaaattctttacgtgctctccaaatcttcacgcattctccaaaattggatcaa |
27233202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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