View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0028Eco1 (Length: 223)

Name: NF0028Eco1
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0028Eco1
NF0028Eco1
[»] chr2 (6 HSPs)
chr2 (9-131)||(31638712-31638834)
chr2 (44-166)||(19271242-19271366)
chr2 (167-222)||(28246662-28246717)
chr2 (173-222)||(11023083-11023131)
chr2 (173-221)||(39561-39609)
chr2 (163-222)||(38148490-38148550)
[»] chr7 (10 HSPs)
chr7 (168-222)||(34690995-34691049)
chr7 (110-166)||(21026961-21027017)
chr7 (167-222)||(4322642-4322697)
chr7 (173-222)||(30109736-30109785)
chr7 (168-221)||(45463670-45463723)
chr7 (114-166)||(28172241-28172293)
chr7 (176-221)||(23955323-23955368)
chr7 (129-166)||(40346071-40346108)
chr7 (167-220)||(48303721-48303774)
chr7 (176-221)||(36762718-36762763)
[»] chr3 (2 HSPs)
chr3 (168-222)||(41944576-41944630)
chr3 (165-221)||(48635411-48635467)
[»] chr6 (5 HSPs)
chr6 (168-222)||(17952112-17952166)
chr6 (168-219)||(35175936-35175987)
chr6 (166-221)||(4641353-4641408)
chr6 (168-221)||(17950561-17950614)
chr6 (172-220)||(34343847-34343895)
[»] chr4 (10 HSPs)
chr4 (168-222)||(5484540-5484594)
chr4 (168-222)||(39921494-39921548)
chr4 (168-221)||(5486090-5486143)
chr4 (168-221)||(39083639-39083692)
chr4 (173-222)||(39189387-39189436)
chr4 (162-222)||(42880825-42880885)
chr4 (171-222)||(32652102-32652153)
chr4 (167-222)||(43779937-43779992)
chr4 (168-221)||(39923045-39923098)
chr4 (166-219)||(47941809-47941862)
[»] chr1 (3 HSPs)
chr1 (167-216)||(5783363-5783412)
chr1 (110-166)||(38586157-38586213)
chr1 (90-163)||(26765376-26765450)
[»] chr8 (3 HSPs)
chr8 (174-221)||(28433787-28433834)
chr8 (167-222)||(40020705-40020760)
chr8 (166-220)||(31201215-31201269)
[»] scaffold0477 (1 HSPs)
scaffold0477 (166-221)||(6705-6760)
[»] chr5 (2 HSPs)
chr5 (168-222)||(42620833-42620887)
chr5 (168-221)||(38596868-38596921)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 31638712 - 31638834
Alignment:
Q  9 gctttatcattcatcatgattctatctgatttgaagaaatggatcttctcctgcctttattatttagccatctctaatgtttttcatccacaactgagag 108  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  31638712 gctttatcatccatcatgattctatctgatttgaagaaatggatcttctcctgcctttattatttaaccatctctcatgtttttcatccacaactgagag 31638811  T
Q  109 ctcataataaatgaataaataaa 131  Q
    |||| || |||||||||||||||    
T  31638812 ctcacaacaaatgaataaataaa 31638834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 19271242 - 19271366
Alignment:
Q  44 gaaatggatcttctcctgcctttattatttagccatctctaatgtttttcatccacaa--ctgagagctcataataaatgaataaataaaaaacagcagt 141  Q
    |||||||||| |||| ||||| |||| || ||||| | || |||| |||||||||  |  |||||||||||||| |||| || ||||||| |||||||||    
T  19271242 gaaatggatcctctcttgcctatattgttcagccacccctcatgtgtttcatccaacaggctgagagctcataacaaataaagaaataaataacagcagt 19271341  T
Q  142 tttggaaagagagagaaacatagat 166  Q
    |||||||||||||| |||| |||||    
T  19271342 tttggaaagagagaaaaacgtagat 19271366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 28246662 - 28246717
Alignment:
Q  167 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  28246662 cgagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcgtcccc 28246717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 11023131 - 11023083
Alignment:
Q  173 aaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  11023131 aaccatcaatttcgtccctgaattttcaggg-tcggccaaattcgtcccc 11023083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 39561 - 39609
Alignment:
Q  173 aaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||||||||||| ||||||||||||||| || | |||||||||||||||    
T  39561 aaccatcaatttagtccctgaatttttacgggtcggccaaattcgtccc 39609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 38148490 - 38148550
Alignment:
Q  163 agatcgagtaaaccatcaatttcgtccctgaatttttagggat-tggccaaattcgtcccc 222  Q
    |||| ||||||||||||||||||||||||||||||| || |||  ||||||||| ||||||    
T  38148490 agattgagtaaaccatcaatttcgtccctgaattttcagagatcgggccaaatttgtcccc 38148550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 34690995 - 34691049
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  34690995 gagtaaaccatcaatttcatccctgaatttttagggatcggccaaattcgtcccc 34691049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 21027017 - 21026961
Alignment:
Q  110 tcataataaatgaataaataaaaaacagcagttttggaaagagagagaaacatagat 166  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  21027017 tcataataaataaataaataaaaaacagcagttttggaaagagagaataacatagat 21026961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 4322697 - 4322642
Alignment:
Q  167 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||| ||||||||    
T  4322697 cgagtaaaccatcaatttcgtccctgaatattcagggatcggccaaactcgtcccc 4322642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 30109785 - 30109736
Alignment:
Q  173 aaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  30109785 aaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtcccc 30109736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 45463670 - 45463723
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||| |||||||||||||||||||||||||| |||| | |||||||||||||||    
T  45463670 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccc 45463723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 28172241 - 28172293
Alignment:
Q  114 aataaatgaataaataaaaaacagcagttttggaaagagagagaaacatagat 166  Q
    ||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||    
T  28172241 aataaataaataaatacaaaacagcaattttgaaaagagagagaaacatagat 28172293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 23955368 - 23955323
Alignment:
Q  176 catcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  23955368 catcaacttcgtctctgaatttttatggattggccaaattcgtccc 23955323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 40346071 - 40346108
Alignment:
Q  129 aaaaaacagcagttttggaaagagagagaaacatagat 166  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  40346071 aaaaaacagcagttttggaaagagagaaaaacatagat 40346108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 48303774 - 48303721
Alignment:
Q  167 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcc 220  Q
    |||||||||||||||||||||||||||||||| || ||| || ||||| |||||    
T  48303774 cgagtaaaccatcaatttcgtccctgaattttcagcgatcggtcaaatccgtcc 48303721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 36762763 - 36762718
Alignment:
Q  176 catcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||||| |||||||||||||||||| |||| ||||||||| |||||    
T  36762763 catcaacttcgtccctgaatttttacggatcggccaaattagtccc 36762718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 41944576 - 41944630
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  41944576 gagtaaaccatcaatttcgtccctgaattttcagggatcggccaaattcgtcccc 41944630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 48635467 - 48635411
Alignment:
Q  165 atcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    ||||||| || ||||||||||||||||||||||| | |||| || ||||||||||||    
T  48635467 atcgagtgaatcatcaatttcgtccctgaattttcacggatcggtcaaattcgtccc 48635411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 17952166 - 17952112
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    |||| |||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  17952166 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtcccc 17952112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 35175987 - 35175936
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtc 219  Q
    |||| ||||||||||||||||| |||||||| |||||| |||||||||||||    
T  35175987 gagtgaaccatcaatttcgtccttgaattttcagggatcggccaaattcgtc 35175936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 4641353 - 4641408
Alignment:
Q  166 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||||| |||||||||||| ||||||||||||| | || | |||||||||||||||    
T  4641353 tcgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccc 4641408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 17950561 - 17950614
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||| ||||||||||||| |||||||||||||| || | |||||| ||||||||    
T  17950561 gagtgaaccatcaatttcatccctgaatttttacgggtcggccaacttcgtccc 17950614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 34343847 - 34343895
Alignment:
Q  172 aaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcc 220  Q
    |||||||||||||||||| |||||||||| | ||||| |||||| ||||    
T  34343847 aaaccatcaatttcgtccttgaatttttaagaattggtcaaatttgtcc 34343895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 5484540 - 5484594
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    |||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  5484540 gagtgaaccatcaatttcgtccatgaatttttaggggtcggccaaattcgtcccc 5484594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 39921494 - 39921548
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    |||| |||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  39921494 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtcccc 39921548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 5486143 - 5486090
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  5486143 gagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcatccc 5486090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 39083639 - 39083692
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||| |||||||||||||||||||||||||| |||| | |||||||||||||||    
T  39083639 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccc 39083692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 39189387 - 39189436
Alignment:
Q  173 aaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  39189387 aaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtcccc 39189436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 42880885 - 42880825
Alignment:
Q  162 tagatcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    ||||| |||| |||||||||||| ||||||||||||| |||| | ||||||||||||||||    
T  42880885 tagatagagtgaaccatcaattttgtccctgaattttcaggggtcggccaaattcgtcccc 42880825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 32652102 - 32652153
Alignment:
Q  171 taaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    |||||||||||||||||| ||||||||| |||| | ||||||||||||||||    
T  32652102 taaaccatcaatttcgtcactgaattttcagggttcggccaaattcgtcccc 32652153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 43779992 - 43779937
Alignment:
Q  167 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    ||||| |||| ||||||||||||||||||||| |||| | ||||||||||||||||    
T  43779992 cgagtgaaccttcaatttcgtccctgaattttcaggggtcggccaaattcgtcccc 43779937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 39923098 - 39923045
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||| ||||||||||||||||||||||||||||  | | |||||| ||||||||    
T  39923098 gagtgaaccatcaatttcgtccctgaatttttacaggtcggccaacttcgtccc 39923045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 47941809 - 47941862
Alignment:
Q  166 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtc 219  Q
    |||||| |||||||||||| ||||||||||||||| || | || ||||||||||    
T  47941809 tcgagtgaaccatcaatttagtccctgaatttttacgggtcggtcaaattcgtc 47941862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 5783363 - 5783412
Alignment:
Q  167 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattc 216  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  5783363 cgagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattc 5783412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 38586213 - 38586157
Alignment:
Q  110 tcataataaatgaataaataaaaaacagcagttttggaaagagagagaaacatagat 166  Q
    |||||| |||| ||||||||||||||| |||||||| ||||||||| ||||||||||    
T  38586213 tcataacaaataaataaataaaaaacaacagttttgaaaagagagaaaaacatagat 38586157  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 26765376 - 26765450
Alignment:
Q  90 tttcatcca-caactgagagctcataataaatgaataaataaaaaacagcagttttggaaagagagagaaacata 163  Q
    ||||||||| |||||||||| |||||| |||| || ||||||| ||| ||||||||| ||| ||||| |||||||    
T  26765376 tttcatccaacaactgagagatcataacaaataaagaaataaataactgcagttttgaaaatagagaaaaacata 26765450  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 28433834 - 28433787
Alignment:
Q  174 accatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||||    
T  28433834 accatcaatttcgtccctgaattttcaaggatcggccaaattcgtccc 28433787  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 40020760 - 40020705
Alignment:
Q  167 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    ||||| ||||||||||||||||||||||| ||||||| |  |||||||||||||||    
T  40020760 cgagtgaaccatcaatttcgtccctgaatctttaggggtctgccaaattcgtcccc 40020705  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 31201269 - 31201215
Alignment:
Q  166 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcc 220  Q
    |||||| |||||||||||| ||||||||||||| | || | ||||||||||||||    
T  31201269 tcgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtcc 31201215  T

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Target: scaffold0477 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 6760 - 6705
Alignment:
Q  166 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||||| |||||||||||| ||||||||||||| | || | |||||||||||||||    
T  6760 tcgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccc 6705  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 42620887 - 42620833
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccc 222  Q
    |||| ||||||||||||| |||| ||||||| |||| | ||||||||||||||||    
T  42620887 gagtcaaccatcaatttcatcccggaattttcaggggtcggccaaattcgtcccc 42620833  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 38596868 - 38596921
Alignment:
Q  168 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtccc 221  Q
    |||| ||||||||| ||||||| |||||||||| || | |||||||||||||||    
T  38596868 gagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaattcgtccc 38596921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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