View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Eco10 (Length: 477)
Name: NF0028Eco10
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Eco10 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 44723528 - 44723053
Alignment:
| Q |
8 |
attccaactctaggtatctgcaattccattctgcagtgaatgtgtggaaaaggcttcactaattattgnnnnnnngtcattgtgttagaatcaaccaccc |
107 |
Q |
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| T |
44723528 |
attccaactctaggtatctgcaattccattctgcactgaatgtgtggaaaaggcttcactaattattgtttttttgtcattgtgttaggatcaaccaccc |
44723429 |
T |
|
| Q |
108 |
aaaacagaaatctattctacagtagtattaacattgtgtgtagactcaaattctatattaaacttaaaacatcaaataaaataattgttgttactagatt |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44723428 |
aaaacagaaatctattctacagtagtattaaccttgtgtgtagactcaaattctatattaaacttaaaacatcaaataaaataattgttgttactagatt |
44723329 |
T |
|
| Q |
208 |
aattttgtaaggaaatgggccaagtgggtgaagaaagcagacaaaacttgtgtaaactgaaagagcaagacattatgggcgccttcccnnnnnnnccttt |
307 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44723328 |
aattttgtaaagaaatggaccaagtgggtgaagaaagcagacaaaacttgtgtaaactgaaagagcaagacattatgggcgccttcccaaaaaaaccttt |
44723229 |
T |
|
| Q |
308 |
cattaatggtatgttttgtcagaaactgaccacactcaaacacaagtggaaataattttcaattttcatccctttctctatgcggccatcacaacatgtg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44723228 |
cattaatggtatgttttgtcagaaactgaccacactcaaacacaagtggatataattttcaattttcatccctttctctatgcggccatcacaacatgtg |
44723129 |
T |
|
| Q |
408 |
cagaccataatgttgtttg-------ttacaattcattttatttagtttagtaagaaccttgataccactattagc |
476 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44723128 |
cagaccataatgttgtttgttacaaattacaattcattttatttagtttagtaagaaccttgataccactattagc |
44723053 |
T |
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