View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0028Eco11 (Length: 253)
Name: NF0028Eco11
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Eco11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 37532407 - 37532165
Alignment:
| Q |
10 |
tattactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataaca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532407 |
tattactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataaca |
37532308 |
T |
|
| Q |
110 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatcttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532307 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatcttt |
37532208 |
T |
|
| Q |
210 |
gagtcatttgagaaatttggagtggttggacctctcatgcaac |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532207 |
aagtcatttgagaaatttggagtggttggacctctcatgcaac |
37532165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 37639053 - 37638811
Alignment:
| Q |
10 |
tattactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataaca |
109 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639053 |
tattactacaatgattctgttgtggtcacaatgaaaggttttttcatggagctaacaaagatattgactactttcacaactattgatttatcaaataaca |
37638954 |
T |
|
| Q |
110 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatcttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37638953 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcataggtagcattccacaatcttt |
37638854 |
T |
|
| Q |
210 |
gagtcatttgagaaatttggagtggttggacctctcatgcaac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638853 |
gagtcatttgagaaatttggagtggttggacctctcatgcaac |
37638811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 37593511 - 37593269
Alignment:
| Q |
10 |
tattactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataaca |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| || |||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37593511 |
tattactataatgattctgttgtggtcacagtgaaaggttttttcattgagctaacaaggatattgactgctttcacaactattgatttatcaaataaca |
37593412 |
T |
|
| Q |
110 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatcttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593411 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatcttt |
37593312 |
T |
|
| Q |
210 |
gagtcatttgagaaatttggagtggttggacctctcatgcaac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593311 |
gagtcatttgagaaatttggagtggttggacctctcatgcaac |
37593269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 37823211 - 37822969
Alignment:
| Q |
10 |
tattactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataaca |
109 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37823211 |
tattactacaatgattctgttgtggtcacagtgaaaggttttttcatggagctaacaaggatattgactgctttcacaactattgatttatcaaataaca |
37823112 |
T |
|
| Q |
110 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatcttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823111 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatcttt |
37823012 |
T |
|
| Q |
210 |
gagtcatttgagaaatttggagtggttggacctctcatgcaac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823011 |
gagtcatttgagaaatttggagtggttggacctctcatgcaac |
37822969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 37401851 - 37402093
Alignment:
| Q |
10 |
tattactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataaca |
109 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||| || |||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37401851 |
tattactacaatgattctgttgtggtcacagtgaaaggttttttcattgagctaacaaggatattgactgctttcacaactattgatttatcaaataaca |
37401950 |
T |
|
| Q |
110 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatcttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37401951 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaatctttcaaataatggaatcacaggtagcattccacaatcttt |
37402050 |
T |
|
| Q |
210 |
gagtcatttgagaaatttggagtggttggacctctcatgcaac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402051 |
gagtcatttgagaaatttggagtggttggacctctcatgcaac |
37402093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 37710812 - 37710572
Alignment:
| Q |
12 |
ttactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacatg |
111 |
Q |
| |
|
|||||| |||||||| || ||||||||| |||||||||||| || |||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37710812 |
ttactacaatgattccgttgtggtcacagtgaaaggttttttcattgagctaacaaggatattgactgctttcacaactattgatttatcaaataacatg |
37710713 |
T |
|
| Q |
112 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37710712 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaagtagcattccacaatctttga |
37710613 |
T |
|
| Q |
212 |
gtcatttgagaaatttggagtggttggacctctcatgcaac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710612 |
gtcatttgagaaatttggagtggttggacctctcatgcaac |
37710572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 37695902 - 37695664
Alignment:
| Q |
10 |
tattactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataaca |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| || |||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37695902 |
tattactataatgattctgttgtggtcacagtgaaaggttttttcattgagctaacaaggatattgactgctttcacaactattgatttatcaaataaca |
37695803 |
T |
|
| Q |
110 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatcttt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37695802 |
tgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagtattccacaatcttt |
37695703 |
T |
|
| Q |
210 |
gagtcatttgagaaatttggagtggttggacctctcatg |
248 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37695702 |
gggtcatttgagaaaattggagtggttggacctctcatg |
37695664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 37435016 - 37434781
Alignment:
| Q |
11 |
attactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37435016 |
attactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataactt |
37434917 |
T |
|
| Q |
111 |
gtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttg |
210 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
37434916 |
gtttgaaggaaaaattcctctagtcattggagaattaaattctctcaaaggtcttaacctttcaaacaatagaatcacaggtaccattccacaatctttg |
37434817 |
T |
|
| Q |
211 |
agtcatttgagaaatttggagtggttggacctctca |
246 |
Q |
| |
|
||| | |||||| ||||||||||||| ||||||||| |
|
|
| T |
37434816 |
agtaaattgagacatttggagtggttagacctctca |
37434781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 37428358 - 37428126
Alignment:
| Q |
11 |
attactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacat |
110 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
37428358 |
attactataatgattctgtggtggtcatagtgaaaggtttttctatggagctaacaaggatattgacaactttcacaactattgatttgtcaaataacat |
37428259 |
T |
|
| Q |
111 |
gtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttg |
210 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37428258 |
gtttgaaggagaaattcctcaagtcgttggagaattgaattctctcaaaggtctta---tttcaaacaatggaatcacaggtagcattccacaatctttg |
37428162 |
T |
|
| Q |
211 |
agtcatttgagaaatttggagtggttggacctctca |
246 |
Q |
| |
|
||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
37428161 |
agtaatctgagaaacttggagtggttggacctctca |
37428126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 37701991 - 37701758
Alignment:
| Q |
12 |
ttactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacatg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||||||||||| |||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37701991 |
ttactacaatgattctgtggtggtcatagtgaaaggttttttcatggagctaaaaaggatattgacgactttcacaactattgatttatcaaataacatg |
37701892 |
T |
|
| Q |
112 |
tttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttga |
211 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37701891 |
tttgaaggtagaattccacaagtcattggagaattatattctcttaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttga |
37701792 |
T |
|
| Q |
212 |
gtcatttgagaaatttggagtggttggacctctc |
245 |
Q |
| |
|
|| || | ||||| |||||||||||||||||||| |
|
|
| T |
37701791 |
gtaatctaagaaacttggagtggttggacctctc |
37701758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 37393740 - 37393975
Alignment:
| Q |
11 |
attactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacat |
110 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |||| || ||| |||| | ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37393740 |
attactataatgattctgtggtgatcataatgaaaggtctttccatagagttaacgaggatattgactacttttacaactattgatttatcaaataacaa |
37393839 |
T |
|
| Q |
111 |
gtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttg |
210 |
Q |
| |
|
|||||| || |||||| || ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
37393840 |
gtttgatggagaaatttcagaagtcattggagaattaaattctctcaaaggccttaacctctcaaacaatggaatcacaggaaccattccacaatcttta |
37393939 |
T |
|
| Q |
211 |
agtcatttgagaaatttggagtggttggacctctca |
246 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37393940 |
agtcatttgagaaatttagagtggttggacctctca |
37393975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 37383180 - 37383415
Alignment:
| Q |
11 |
attactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
37383180 |
attactataatgattctgtggtggtcgtagtaaaaggactttctatggagctaacaaagatattgaccacgttcacaactattgatttatcaaataacat |
37383279 |
T |
|
| Q |
111 |
gtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttg |
210 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||||| ||||||||||| ||||| | |||||| |
|
|
| T |
37383280 |
gtttgaaggagaaattccacaagtctttggagaattgatttctctcaaaggccttaacctttcaaacaataaaatcacaggtacaattccttattctttg |
37383379 |
T |
|
| Q |
211 |
agtcatttgagaaatttggagtggttggacctctca |
246 |
Q |
| |
|
||| |||||||||| | |||||||| ||||||||| |
|
|
| T |
37383380 |
agtagtttgagaaatctagagtggttagacctctca |
37383415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 37440238 - 37440141
Alignment:
| Q |
149 |
attctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttgagtcatttgagaaatttggagtggttggacctctca |
246 |
Q |
| |
|
||||||| ||||| |||||||| | ||| |||||||||| | ||| ||||||||||||||||||| | ||||||||||| ||||||| |||||||||| |
|
|
| T |
37440238 |
attctcttaaaggccttaacctcttaaaaaatggaatcaaaagtaccattccacaatctttgagtaaattgagaaatttagagtggtcggacctctca |
37440141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 26450986 - 26450832
Alignment:
| Q |
20 |
atgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacatgtttgaagg |
119 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || | | |||||| | ||| |||||||||||||||||| ||||||||||||| || | |||||||| |
|
|
| T |
26450986 |
atgattctgttgtggtcacaataaaagggttcgatttagagctagagaggatcttgactactttcacaactcttgatttatcaaacaataaatttgaagg |
26450887 |
T |
|
| Q |
120 |
tgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttca |
174 |
Q |
| |
|
|| |||||| |||||||||| || || || |||| |||||||||||||||| |
|
|
| T |
26450886 |
agagattccaacgatcattggagagttgaagtcactcataggacttaacctttca |
26450832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 26437564 - 26437463
Alignment:
| Q |
73 |
ttgactactttcacaactattgatttatcaaataacatgtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaaccttt |
172 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || | |||||||| || |||||| | |||||||||| || || || |||| ||||||||| |||| |
|
|
| T |
26437564 |
ttgactactttcacaactcttgatttatcaaagaataaatttgaaggagagattccaataatcattggagagttgaagtcactcataggacttaatcttt |
26437465 |
T |
|
| Q |
173 |
ca |
174 |
Q |
| |
|
|| |
|
|
| T |
26437464 |
ca |
26437463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 16843850 - 16844091
Alignment:
| Q |
11 |
attactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacat |
110 |
Q |
| |
|
||||||| || |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843850 |
attactacaacgattctgtggtggtcatagtgaaaggtttttctatggagctaacaaggatattgactactttcacaactattgatttatcaaataacat |
16843949 |
T |
|
| Q |
111 |
gtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
16843950 |
gtttgaaggtgaaattccacaagtcattggagagttatattctctcattggacttaacctttcaaaaaatggaatcacgggtagcattccacaatctttg |
16844049 |
T |
|
| Q |
211 |
agtcatttgagaaatttggagtggttggacctctcatgcaac |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16844050 |
agtcatttgagaaatttggagtggttggacctctcatgcaac |
16844091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 16846517 - 16846752
Alignment:
| Q |
11 |
attactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacat |
110 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16846517 |
attactataatgattctgtggtggtcatagtgaaaggtttttctatggagttaacaaggatattgactattttcacaactattgatttatcaaataacat |
16846616 |
T |
|
| Q |
111 |
gtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttg |
210 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
16846617 |
gtttgaaggaaaaattccagaggtcattggagaattaaattctctcaaaggtcttaacctttcaaacaatagaatcacaggtaccattccacaatctttg |
16846716 |
T |
|
| Q |
211 |
agtcatttgagaaatttggagtggttggacctctca |
246 |
Q |
| |
|
||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
16846717 |
agtaaattgagacatttggagtggttggacctctca |
16846752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 24218585 - 24218820
Alignment:
| Q |
11 |
attactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattgactactttcacaactattgatttatcaaataacat |
110 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||||| |||||||| |||||||| | |||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
24218585 |
attattataatgattctgtggtgatcataatgaaaggcttttctatagagctaacgaggatactgactactttcacaacgattgatttatcgaataacat |
24218684 |
T |
|
| Q |
111 |
gtttgaaggtgaaattccacaagtcattggagaattaaattctctcaaaggacttaacctttcaaacaatggaatcacaggtagcattccacaatctttg |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
24218685 |
gtttgaaggagaaattccacaagtcattgggaaattaaattttctcaaaggccttaacctttcacacaatcaaatcataggtaccattccacaatctttg |
24218784 |
T |
|
| Q |
211 |
agtcatttgagaaatttggagtggttggacctctca |
246 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
24218785 |
agtaatttgcgaaatttggagtggttggacctctca |
24218820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 14552669 - 14552605
Alignment:
| Q |
11 |
attactataatgattctgtggtggtcacaatgaaaggtttttctatggagctaacaaagatattg |
75 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||| || |||| ||||||| |
|
|
| T |
14552669 |
attactataatgattctgtggtggtcgtaatgaaaggtctttctatggatcttacaaggatattg |
14552605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 663 times since January 2019
Visitors: 1100