View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Eco12 (Length: 305)
Name: NF0028Eco12
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Eco12 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 42309084 - 42308850
Alignment:
| Q |
14 |
ttattagtttgtgattttatatagacgttgtgtattatttttttaaataaagggagaatggtgaannnnnnnnnnnnaangaaancgaccctngancatt |
113 |
Q |
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| T |
42309084 |
ttattagtttgtgattttatatagacgttgtgtattatttttttaaataaagggagaatggtgaattttttttt---aatgaaatcgacacttgatcatt |
42308988 |
T |
|
| Q |
114 |
ttaataaaaaccattgaggagttttgaacatttaggattatancgttaaacncttactatngaactgatatgatttaggataatttangcgnatactaat |
213 |
Q |
| |
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||||||||||||||||| ||| |||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||| | | |||||||| |
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| T |
42308987 |
ttaataaaaaccattgacgagatttgaacatttaagattataacgttaaactcttactattgaactgatatgatttaggataatttatgtgtatactaat |
42308888 |
T |
|
| Q |
214 |
tcncttangtnccaaacaaagaangatcatcacttttc |
251 |
Q |
| |
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|| |||| || ||||| |||||| |||||||||||||| |
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| T |
42308887 |
tcacttatgttccaaataaagaatgatcatcacttttc |
42308850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 1776027 - 1775937
Alignment:
| Q |
110 |
cattttaataaaaaccattgaggagttttgaacatttaggattatancgttaaacncttactatngaactgatatgatttaggataattta |
200 |
Q |
| |
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||||||||||||||| ||||| | | |||||||||| || |||| |||||||| ||| |||| || ||||||||||||||||| ||||| |
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| T |
1776027 |
cattttaataaaaacaattgaagggagttgaacatttcagactataacgttaaactcttgctattgagctgatatgatttaggatcattta |
1775937 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 1776123 - 1776071
Alignment:
| Q |
10 |
atgtttattagtttgtgattttatatagacgttgtgtattatttttttaaataaa |
64 |
Q |
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| T |
1776123 |
atgtttattagtttgtgattt--tatagatgttgtgtattatttttaaaaataaa |
1776071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 41324513 - 41324273
Alignment:
| Q |
8 |
tcatgtttattagtttgtgattttatatagacgttgtgtattatttttttaaataaagggagaatggtgaannnnnnnnnnnn--aangaaancgaccct |
105 |
Q |
| |
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||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| || |||| |||| || |
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| T |
41324513 |
tcatgcttattagtttgtgattttaca--gacgttgtgtattattttttaaaataaagggagaatggtgaattttttttttttttaatgaaatcgacact |
41324416 |
T |
|
| Q |
106 |
ngancattttaataaaaaccattgaggagttttgaacatttaggattatancgttaaacncttactatngaactgatatgatttaggataatttangcgn |
205 |
Q |
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|| ||||||||||||||||||||||||| |||||||| ||| |||||| |||||||| |||||||| || || |||||||||||||||||||| | | |
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| T |
41324415 |
tgatcattttaataaaaaccattgaggagatttgaacacttaaaattataacgttaaactcttactattgagcttatatgatttaggataatttatgtgt |
41324316 |
T |
|
| Q |
206 |
atactaattcncttangtnccaaacaaagaangatcatcacttt |
249 |
Q |
| |
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||||||||| |||| || |||||||||||| |||||||||||| |
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| T |
41324315 |
atactaatt-acttatgttccaaacaaagaatgatcatcacttt |
41324273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 19790169 - 19790406
Alignment:
| Q |
8 |
tcatgtttattagtttgtgattttatatagacgttgtgtattatttttttaaataaagggagaatggtgaannnnnnnnnnnnaangaaancgaccctng |
107 |
Q |
| |
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||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||| || |||| || || | |
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| T |
19790169 |
tcatgcttattagtttgtgattttata--gacgatgtgtattattttttaaaataaatggagaatggtgaatttattttt---aatgaaattgatacttg |
19790263 |
T |
|
| Q |
108 |
ancattttaataaaaaccattgaggagttttgaacatttaggattatancgttaaacncttactatngaactgatatgatttaggataatttangcgnat |
207 |
Q |
| |
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| ||||||||||||||||||||| | |||| |||||||| ||||||| ||||| || |||||||| |||||||||||||||||||| ||||| | | || |
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| T |
19790264 |
atcattttaataaaaaccattgaaggatttt-aacatttaagattataacgttagacacttactattgaactgatatgatttaggatcatttatgtgtat |
19790362 |
T |
|
| Q |
208 |
actaattcncttangtnccaaacaaagaangatcatcacttttc |
251 |
Q |
| |
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|||||||| || || |||||||||||| | |||||||||||| |
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| T |
19790363 |
actaattcatttttgttccaaacaaagaatgctcatcacttttc |
19790406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 47249811 - 47249878
Alignment:
| Q |
8 |
tcatgtttattagtttgtgattttatatagacgttgtgtattatttttttaaataaagggagaatggtga |
77 |
Q |
| |
|
||||| |||||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
47249811 |
tcatgcttattagtttgtgactttata--gacgttgtgtattgttttttaaaataaagggagaatggtga |
47249878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 4081604 - 4081842
Alignment:
| Q |
8 |
tcatgtttattagtttgtgattttatatagacgttgtgtattatttttttaaataaagggagaatggtgaannnnnnnnnnnnaangaaancgaccctng |
107 |
Q |
| |
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||||| ||||||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| || |||| ||| || | |
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| T |
4081604 |
tcatgcttattagtttgtgattttata--gacccagtgtattattttttaaaataaatggagaatggtgaaattattttt---aacgaaattgacacttg |
4081698 |
T |
|
| Q |
108 |
ancattttaataaaaaccattgaggagttttgaacatttaggattatancgttaaacncttactatngaactgatatgatttaggataatttangcgnat |
207 |
Q |
| |
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| ||||||||||||||||||||| ||| |||||| ||||| ||||||| |||||||| ||| |||| || ||||||||||||||| | ||||| | | || |
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|
| T |
4081699 |
atcattttaataaaaaccattgaagagatttgaatatttaagattataacgttaaactcttgctattgagctgatatgatttaggttcatttatgtgtat |
4081798 |
T |
|
| Q |
208 |
actaattcncttangtnccaaacaaagaangatcatcacttttc |
251 |
Q |
| |
|
|||||||| |||| || ||||| |||||| | |||||||||||| |
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|
| T |
4081799 |
actaattcacttacgttccaaataaagaatgctcatcacttttc |
4081842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 4845071 - 4844841
Alignment:
| Q |
15 |
tattagtttgtgattttatatagacgttgtgtattatttttttaaataaagggagaatggtgaannnnnnnnnnnnaangaaancgaccctngancattt |
114 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| || |||| ||| || | ||||| |
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|
| T |
4845071 |
tattagtttgtgattttata--gaccctgtgtattatttttttaaataaatcgagaatggtgaaattattttt---aacgaaattgacacttaatcattt |
4844977 |
T |
|
| Q |
115 |
taataaaaaccattgaggagttttgaacatttaggattatancgttaaacncttactatngaactgatatgatttaggataatttangcgnatactaatt |
214 |
Q |
| |
|
||||||||||||| ||| || |||||| ||||| ||||||| |||||||| || |||| || ||||||||||||||| | ||||| | | ||||||||| |
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|
| T |
4844976 |
taataaaaaccatcgagaagatttgaatatttaagattataacgttaaacttttgctattgagctgatatgatttaggttcatttatgtgtatactaatt |
4844877 |
T |
|
| Q |
215 |
cncttangtnccaaacaaagaangatcatcactttt |
250 |
Q |
| |
|
| |||| || |||||||||||| | |||||| |||| |
|
|
| T |
4844876 |
cacttacgttccaaacaaagaatgctcatcattttt |
4844841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 32315408 - 32315306
Alignment:
| Q |
149 |
gattatancgttaaacncttactatngaactgatatgatttaggataatttangcgnatactaattcncttangtnccaaacaaagaangatcatcactt |
248 |
Q |
| |
|
||||||| |||||||| |||| ||| || ||||||||||||||||| ||||| | | |||||||||| ||| || |||||||||||| | ||||||||| |
|
|
| T |
32315408 |
gattataacgttaaactcttagtattgagctgatatgatttaggatcatttatgtgtatactaattcatttatgttccaaacaaagaatgctcatcactt |
32315309 |
T |
|
| Q |
249 |
ttc |
251 |
Q |
| |
|
||| |
|
|
| T |
32315308 |
ttc |
32315306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 20905154 - 20905084
Alignment:
| Q |
8 |
tcatgtttattagtttgtgattttatatagacgttgtgtattatttttttaaataaagggagaatggtgaa |
78 |
Q |
| |
|
||||| ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20905154 |
tcatgcttattagtttgtgtgattttacagacgttgtgtattatttttttaaataaagggagaatggtgaa |
20905084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 20905054 - 20905017
Alignment:
| Q |
110 |
cattttaataaaaaccattgaggagttttgaacattta |
147 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
20905054 |
cattttaataaaaacgattgaggagatttgaacattta |
20905017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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