View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Eco14 (Length: 582)
Name: NF0028Eco14
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Eco14 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 19013173 - 19012828
Alignment:
| Q |
7 |
acctttttcattttattttcaatagctttatctgtactactacgacattcatatacatttaatcataaataatataaatattgataaaaagatataaa-c |
105 |
Q |
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| T |
19013173 |
acctttttcattttattttcaatagctttatctgtactactacaacattcatatacatttaatcataaataatataaatattgataaaaagataaaaaac |
19013074 |
T |
|
| Q |
106 |
aaggtgaaaattattgttagtataagagataaattgattgaaatgaaacattaagataagtattttcatatattactttattatacctcggtagtggtgc |
205 |
Q |
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| T |
19013073 |
aaggtgaaaattattattagtgtaagagataaattgattgaaatgaaacattaagataagtatttccatatattactttattatacctcggtggtggtga |
19012974 |
T |
|
| Q |
206 |
tgatacttgttgaaacctgcatatatcttccttgtttgccaaattttttataatctcatcaaaggtcaaatactccattcggttatcattttggtacaga |
305 |
Q |
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| T |
19012973 |
tgatacttgttgaaacctgcatatatcttccttgtttgccaaattttttataatctcatcaaaggtcaaatactccattcggttatcattttggtacaga |
19012874 |
T |
|
| Q |
306 |
acctaaatatttaaataactaatgttaacagacaagttaattgata |
351 |
Q |
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| T |
19012873 |
acctaaatatttaaataactaatgttaacagacaagttaattgata |
19012828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 365 - 581
Target Start/End: Complemental strand, 19012843 - 19012629
Alignment:
| Q |
365 |
gacaagttaattgataataagtttaaagtaaaatcaacaatttatagaaattttgaaagaatgattttcttagcatcattaatagtagccagtgtcatag |
464 |
Q |
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| T |
19012843 |
gacaagttaattgataataagtttaaagtaaaatcaacaatttatagaaattttgaaagaatgattttcttagcatcattgataatagccagtatcatag |
19012744 |
T |
|
| Q |
465 |
aaataatttaattttgacacaatttcattttgtgttttaaactctggattgcatcacatgatgggaccaaaatattgcagttgatgcccacaataaattc |
564 |
Q |
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| T |
19012743 |
aaataatttaattttgacacaatttca--ttgtgtttcaaactgtggattgcatcacatgatgggtccaaaatattgcggttgatgcccacaataaattc |
19012646 |
T |
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| Q |
565 |
aagccacaatttaattc |
581 |
Q |
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| T |
19012645 |
aagccacaatttaattc |
19012629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 100 - 341
Target Start/End: Complemental strand, 18798014 - 18797773
Alignment:
| Q |
100 |
ataaacaaggtgaaaattattgttagtataagagataaattgattgaaatgaaacattaagataagtattttcatatattactttattatacctcggtag |
199 |
Q |
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||||| |||| |||||||||| ||||| || ||||||||||| | || ||||||||||||| ||||||| ||||||| |||||||||||| ||| | |
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| T |
18798014 |
ataaaaaaggggaaaattattaatagtacaatagataaattgaaaggcattcaacattaagataaatattttcttatattattttattataccttggtgg |
18797915 |
T |
|
| Q |
200 |
tggtgctgatacttgttgaaacctgcatatatcttccttgtttgccaaattttttataatctcatcaaaggtcaaatactccattcggttatcattttgg |
299 |
Q |
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| T |
18797914 |
cggtgctgatacttgttggaccctccatatatcttccttgtttgccatattttttaaaatttcatcaagggttaaatattccattcgattatcattcttg |
18797815 |
T |
|
| Q |
300 |
tacagaacctaaatatttaaataactaatgttaacagacaag |
341 |
Q |
| |
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| T |
18797814 |
tacagaacctaaatatccaaataactaatgttaacatacaag |
18797773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 126 - 333
Target Start/End: Complemental strand, 18825171 - 18824964
Alignment:
| Q |
126 |
tataagagataaattgattgaaatgaaacattaagataagtattttcatatattactttattatacctcggtagtggtgctgatacttgttgaaacctgc |
225 |
Q |
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||||| ||||| |||||| || || ||||||||||||||||||||||||||||| |||||||||||| ||| || ||| |||||||||||| ||| | |
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| T |
18825171 |
tataatagatatattgatagacattcaacattaagataagtattttcatatattattttattataccttggtggtagtggtgatacttgttggcccctac |
18825072 |
T |
|
| Q |
226 |
atatatcttccttgtttgccaaattttttataatctcatcaaaggtcaaatactccattcggttatcattttggtacagaacctaaatatttaaataact |
325 |
Q |
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||||||||||||||||||||| |||||| | ||| |||| || ||||||||||||||||||||||||||| | ||||||||||||||||| || ||||| |
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| T |
18825071 |
atatatcttccttgtttgccatatttttaaaaatttcatgaagggtcaaatactccattcggttatcattcttgtacagaacctaaatatccaagtaact |
18824972 |
T |
|
| Q |
326 |
aatgttaa |
333 |
Q |
| |
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|||||||| |
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|
| T |
18824971 |
aatgttaa |
18824964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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