View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0028Eco15 (Length: 795)

Name: NF0028Eco15
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0028Eco15
NF0028Eco15
[»] chr3 (29 HSPs)
chr3 (8-624)||(31339649-31340268)
chr3 (377-565)||(47304441-47304629)
chr3 (421-567)||(46173540-46173688)
chr3 (423-553)||(41819363-41819494)
chr3 (411-567)||(6095426-6095585)
chr3 (419-595)||(30236279-30236460)
chr3 (239-362)||(35864149-35864272)
chr3 (215-376)||(7729714-7729875)
chr3 (239-376)||(1902082-1902219)
chr3 (239-376)||(1911528-1911665)
chr3 (102-376)||(21984097-21984367)
chr3 (423-567)||(46860657-46860804)
chr3 (248-375)||(10480444-10480571)
chr3 (460-567)||(54593886-54593995)
chr3 (411-550)||(43403566-43403709)
chr3 (419-550)||(49199299-49199434)
chr3 (411-477)||(34491459-34491525)
chr3 (377-477)||(40913545-40913646)
chr3 (501-595)||(4570107-4570202)
chr3 (412-550)||(43401624-43401766)
chr3 (251-376)||(11027175-11027300)
chr3 (114-159)||(7729590-7729635)
chr3 (433-550)||(5270571-5270689)
chr3 (497-567)||(55301888-55301957)
chr3 (501-550)||(40913495-40913544)
chr3 (374-428)||(5236254-5236308)
chr3 (376-430)||(22834806-22834860)
chr3 (377-430)||(27305519-27305570)
chr3 (423-550)||(36019047-36019178)
[»] chr7 (19 HSPs)
chr7 (411-595)||(6359780-6359966)
chr7 (391-550)||(2360786-2360946)
chr7 (419-595)||(32357893-32358068)
chr7 (376-567)||(4510338-4510534)
chr7 (376-567)||(4512180-4512376)
chr7 (419-567)||(34310548-34310701)
chr7 (423-547)||(8359157-8359282)
chr7 (458-550)||(4508584-4508676)
chr7 (203-378)||(23756509-23756685)
chr7 (423-567)||(48599175-48599320)
chr7 (425-595)||(3259149-3259322)
chr7 (374-477)||(30814669-30814773)
chr7 (411-477)||(22270220-22270286)
chr7 (497-550)||(22328306-22328359)
chr7 (423-550)||(2390484-2390615)
chr7 (375-430)||(41648812-41648867)
chr7 (376-441)||(6430431-6430497)
chr7 (377-430)||(25616170-25616223)
chr7 (377-430)||(38671025-38671078)
[»] chr1 (31 HSPs)
chr1 (399-563)||(47255155-47255319)
chr1 (419-595)||(13548838-13549014)
chr1 (415-595)||(13546927-13547103)
chr1 (425-520)||(194750-194845)
chr1 (239-373)||(30294164-30294298)
chr1 (426-547)||(31925553-31925674)
chr1 (411-548)||(42297803-42297939)
chr1 (419-550)||(11348898-11349034)
chr1 (419-595)||(37876600-37876780)
chr1 (411-550)||(29136446-29136589)
chr1 (460-595)||(37168452-37168584)
chr1 (469-550)||(7482121-7482200)
chr1 (422-567)||(34603745-34603894)
chr1 (238-376)||(21487374-21487507)
chr1 (218-376)||(27850509-27850668)
chr1 (512-567)||(193794-193849)
chr1 (325-375)||(37244963-37245013)
chr1 (419-550)||(37032903-37033038)
chr1 (118-262)||(46396399-46396541)
chr1 (505-591)||(19754653-19754737)
chr1 (423-548)||(47115373-47115502)
chr1 (411-477)||(19752931-19752997)
chr1 (93-151)||(30294581-30294639)
chr1 (501-550)||(19752881-19752930)
chr1 (328-365)||(42772340-42772377)
chr1 (374-430)||(8550581-8550637)
chr1 (375-430)||(50166978-50167033)
chr1 (411-477)||(19754741-19754807)
chr1 (118-164)||(19967126-19967172)
chr1 (377-430)||(833970-834023)
chr1 (375-428)||(44455477-44455530)
[»] scaffold0466 (1 HSPs)
scaffold0466 (411-595)||(7481-7666)
[»] chr6 (19 HSPs)
chr6 (399-595)||(21589085-21589284)
chr6 (215-376)||(18250759-18250921)
chr6 (371-477)||(602897-603004)
chr6 (419-550)||(26829955-26830091)
chr6 (244-376)||(6822593-6822725)
chr6 (411-595)||(5043782-5043970)
chr6 (411-567)||(17758206-17758366)
chr6 (426-546)||(2972777-2972902)
chr6 (423-548)||(26800788-26800917)
chr6 (399-567)||(17763173-17763345)
chr6 (93-156)||(18250693-18250756)
chr6 (172-281)||(33106714-33106823)
chr6 (330-376)||(33106820-33106866)
chr6 (501-550)||(603005-603054)
chr6 (411-550)||(3808530-3808673)
chr6 (215-296)||(11769810-11769891)
chr6 (95-195)||(6822774-6822872)
chr6 (411-550)||(22424650-22424795)
chr6 (377-430)||(26954091-26954144)
[»] chr4 (29 HSPs)
chr4 (422-567)||(35662623-35662767)
chr4 (411-550)||(41639624-41639766)
chr4 (424-567)||(55085286-55085427)
chr4 (423-567)||(379563-379710)
chr4 (419-595)||(40632599-40632779)
chr4 (422-567)||(12073575-12073721)
chr4 (411-548)||(50262522-50262664)
chr4 (411-524)||(21688470-21688584)
chr4 (423-595)||(26364390-26364566)
chr4 (423-546)||(41964616-41964743)
chr4 (419-567)||(50673682-50673833)
chr4 (411-550)||(2209917-2210060)
chr4 (469-567)||(8648321-8648420)
chr4 (231-375)||(13035541-13035681)
chr4 (118-262)||(26333020-26333161)
chr4 (505-567)||(8665590-8665651)
chr4 (432-550)||(33990044-33990161)
chr4 (423-491)||(54881561-54881629)
chr4 (244-291)||(35747025-35747072)
chr4 (501-567)||(6656138-6656203)
chr4 (501-550)||(27416886-27416935)
chr4 (469-550)||(46703747-46703826)
chr4 (496-595)||(54883174-54883274)
chr4 (115-305)||(22087574-22087761)
chr4 (432-567)||(26699294-26699427)
chr4 (115-151)||(13029086-13029122)
chr4 (411-477)||(6656201-6656267)
chr4 (372-430)||(48893438-48893496)
chr4 (497-550)||(12119743-12119796)
[»] chr8 (16 HSPs)
chr8 (105-368)||(14539331-14539591)
chr8 (232-376)||(40381660-40381804)
chr8 (248-376)||(42163974-42164102)
chr8 (419-595)||(42434825-42435005)
chr8 (459-595)||(4283678-4283813)
chr8 (419-595)||(18655554-18655736)
chr8 (501-595)||(10930118-10930213)
chr8 (238-376)||(37728355-37728493)
chr8 (460-550)||(3772390-3772480)
chr8 (426-544)||(40328980-40329102)
chr8 (460-550)||(11384183-11384273)
chr8 (501-550)||(40221943-40221992)
chr8 (501-550)||(2999723-2999772)
chr8 (118-262)||(1336280-1336424)
chr8 (602-647)||(18106147-18106193)
chr8 (377-430)||(33352465-33352518)
[»] chr5 (17 HSPs)
chr5 (423-567)||(27637454-27637598)
chr5 (93-373)||(15726938-15727218)
chr5 (114-373)||(15810783-15811041)
chr5 (102-376)||(29368555-29368825)
chr5 (215-376)||(4930665-4930825)
chr5 (399-519)||(40763211-40763332)
chr5 (411-523)||(40751202-40751315)
chr5 (411-595)||(27015677-27015860)
chr5 (399-595)||(5058199-5058399)
chr5 (459-550)||(213666-213758)
chr5 (419-477)||(28278563-28278621)
chr5 (377-477)||(40147509-40147610)
chr5 (93-159)||(38351848-38351914)
chr5 (232-291)||(17228912-17228971)
chr5 (411-477)||(38747251-38747318)
chr5 (253-291)||(38351730-38351768)
chr5 (316-373)||(17228979-17229036)
[»] chr2 (14 HSPs)
chr2 (238-376)||(28529007-28529145)
chr2 (118-368)||(42530778-42531035)
chr2 (419-595)||(45727083-45727261)
chr2 (409-595)||(35446710-35446898)
chr2 (241-376)||(44718874-44719009)
chr2 (432-550)||(17450775-17450894)
chr2 (419-556)||(1631567-1631708)
chr2 (433-550)||(42287959-42288080)
chr2 (467-550)||(33648371-33648454)
chr2 (460-550)||(7451317-7451407)
chr2 (374-430)||(34139570-34139626)
chr2 (376-430)||(723546-723600)
chr2 (376-430)||(36987874-36987928)
chr2 (377-430)||(42362660-42362713)
[»] scaffold0176 (1 HSPs)
scaffold0176 (411-595)||(17829-18017)


Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 624
Target Start/End: Original strand, 31339649 - 31340268
Alignment:
Q  8 caaggccaccagtgttagacttgatataggattgtgggttctgcatggtgtggggaacatcgacttgtgcggcaagctaggggatagggacgggtgtatg 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  31339649 caaggccaccagtgttagacttgatataggattatgggttctgcatggtgtggtgaacatcgacttgtgcagcaagctaggggatagggacggatgtatg 31339748  T
Q  108 ttggttcatgtgtgggcttgtgcctacacaaaatttttagaaacacttttttagtagcatcaatatgtatcaatagttgatattttgaccatttgggccc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31339749 ttggttcatgtgtgggcttgtgcctacacaaaatttttagaaacacttttttagtagtatcaatatgtatcaatagttgatattttgaccatttgggccc 31339848  T
Q  208 acactaacacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31339849 acactaacacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcgaaat 31339948  T
Q  308 tgtgtgagaaatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgatatttgttgtgaatgcgtactcaaaatcacaccat 407  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  31339949 tgtgtgagaaatgatcagttaaatgattgtttagttaattatattgagaaagatatttttattgatatttgttgtgaatgcgtactcaaaattacaccaa 31340048  T
Q  408 aataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgc 507  Q
     | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  31340049 tacaaactataatgtgtggagcatgtatcaatggcaaccaacaaccaaagtaaaccacaagcaacaacaataatatagacctagtctataaaccaagtgc 31340148  T
Q  508 atagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagat-accacncccagaaaatgttgacccagttccgtgtc-atga 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| ||||| ||||    
T  31340149 atagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataacaacaccaagaaaatgttgacccagttcggtgtcaatga 31340248  T
Q  606 gttcttac-aagagatacaa 624  Q
    |||||||| |||||||||||    
T  31340249 gttcttacaaagagatacaa 31340268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 377 - 565
Target Start/End: Complemental strand, 47304629 - 47304441
Alignment:
Q  377 tgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaaca 476  Q
    |||| ||||| || ||| ||||||||| ||  | ||||||| |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||    
T  47304629 tgttctgaattcggacttaaaatcacaacaatacaaactatgatgtgtggagcaagtatcaatgacaaccaacaaccaaagtaaatcacaagcaacaaca 47304530  T
Q  477 atagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaaga 565  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47304529 ataatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaaga 47304441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 421 - 567
Target Start/End: Complemental strand, 46173688 - 46173540
Alignment:
Q  421 gtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtataga--cctagtctttaaaccaagtgcatagcaaaacc 518  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |  |||| ||| |||||||||||||||||||||||    
T  46173688 gtgtggagcaagtatcaatggcaaccaacaaccaaagtaaaccacaagcaacagcaataatatataaacctattctataaaccaagtgcatagcaaaacc 46173589  T
Q  519 acaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46173588 acaatccaactaagaaataaacaagataaagaaagcaaaagaaaagata 46173540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 423 - 553
Target Start/End: Original strand, 41819363 - 41819494
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccaca 521  Q
    |||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||| | |||||||||||||  ||||||||||||||||||||||||||    
T  41819363 gtggagcaagtatcaatggcaaccaacaaccaaaagtaaatcacaagcaacaacaacaatatagacctagtccataaaccaagtgcatagcaaaaccaca 41819462  T
Q  522 atccaactaaggaataaacaagataaagaaag 553  Q
    ||| ||| || | |||||||||||||||||||    
T  41819463 atctaaccaaaggataaacaagataaagaaag 41819494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 411 - 567
Target Start/End: Original strand, 6095426 - 6095585
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtg 506  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||| |||||   |||||||||| ||||| | |||||||||||||| ||||| |||||    
T  6095426 aaactatgatgtgtggagcaagtatcaatggcaaccaataatcaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaacgaagtg 6095525  T
Q  507 catagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
     ||||||||||||||||||||| |||| |||||||||||||||| ||  ||||||||||||    
T  6095526 tatagcaaaaccacaatccaaccaaggcataaacaagataaagagag-taaagaaaagata 6095585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 419 - 595
Target Start/End: Complemental strand, 30236460 - 30236279
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaag-----taaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagca 513  Q
    |||||||||||| ||||||||| |||||||||| ||||      | |||||||||||||||||| | |||||||||||||| ||||||||||||||| ||    
T  30236460 atgtgtggagcaagtatcaatgtcaaccaacaaccaaaaattgattaaccacaagcaacaacaacaatatagacctagtctataaaccaagtgcataaca 30236361  T
Q  514 aaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagat-accacncccagaaaatgttgacccagttc 595  Q
    ||| ||||||||||| |||| |||||||||||||||| ||  ||||||||||| || || || ||||| |||||||| |||||    
T  30236360 aaaacacaatccaaccaaggtataaacaagataaagagag-taaagaaaagataacaacaccaagaaattgttgacctagttc 30236279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 35864149 - 35864272
Alignment:
Q  239 acacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgtt 338  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |  ||||| ||||||  ||||| |||||| ||||||||||||||    
T  35864149 acacatatcatcatatatctcaaattctttcttgataatatgaattttatcaagatttgaatgcgaaattgaatgagagatgatcggttaaatgattgtt 35864248  T
Q  339 tagttatttatattgagaaagata 362  Q
    ||||| ||||||| ||||||||||    
T  35864249 tagttgtttatatagagaaagata 35864272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 215 - 376
Target Start/End: Original strand, 7729714 - 7729875
Alignment:
Q  215 cacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtga 314  Q
    ||||||||||||||  |||||  ||||| |||||||||||| ||||| |  ||||| |||||||||||||||||||| |||  |||||||||| | |||     
T  7729714 cacaaattatttctctcttgggccacacctatcatcatatagctcaattcatttcttgataatatgaatattatcaagaatagaatgcaaaatcgagtgg 7729813  T
Q  315 gaaatgatc-agttaaatgattgtttagttatttatattgagaaagatatttttattgatatt 376  Q
    || || ||| ||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  7729814 gagat-atcaagttaaatgattgtttaattatttatatagagaaatatatttttattgatatt 7729875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 1902082 - 1902219
Alignment:
Q  239 acacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgtt 338  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||||| ||||  |||| ||||    ||| | |||||  ||||||| ||||||    
T  1902082 acacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtt 1902181  T
Q  339 tagttatttatattgagaaagatatttttattgatatt 376  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  1902182 tagttatttatatagagaaagatattttcattgatatt 1902219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 1911528 - 1911665
Alignment:
Q  239 acacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgtt 338  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||||| ||||  |||| ||||    ||| | |||||  ||||||| ||||||    
T  1911528 acacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtt 1911627  T
Q  339 tagttatttatattgagaaagatatttttattgatatt 376  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  1911628 tagttatttatatagagaaagatattttcattgatatt 1911665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 102 - 376
Target Start/End: Original strand, 21984097 - 21984367
Alignment:
Q  102 tgtatgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaacacttttttagtagcatcaatatgtatcaatagttgatattttgaccattt 201  Q
    |||||||| ||  |||||||||||||||| ||||||||||||| | ||||  ||||||||||| || |||||  ||||||| |||||||||| || || |    
T  21984097 tgtatgtttgtgtatgtgtgggcttgtgc-tacacaaaattttcaaaaacttttttttagtagtat-aatat--atcaataattgatattttaac-atct 21984191  T
Q  202 gggcccacactaac-acaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaat 300  Q
     | |||||| | |  | |||| ||||||  ||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| || |  ||    
T  21984192 tgacccacatttattaaaaatcatttctctcttggctcacatatatcatcatatatctcaaattctttattgataatatgaatattatcaagaaccggat 21984291  T
Q  301 gcaaaattgtgtgagaaatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgatatt 376  Q
     || ||| |  || || |||||| ||||||||||||||   ||||||||||  ||||| ||| |||||||||||||    
T  21984292 acataatcgaatgtgagatgatcggttaaatgattgttcgattatttatataaagaaatatacttttattgatatt 21984367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 423 - 567
Target Start/End: Complemental strand, 46860804 - 46860657
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaacc 518  Q
    ||||||||  |||||||||||||||| || |||| |||||   |||||| ||||||||| | |||||||||| ||| |||||||||||||||||||||||    
T  46860804 gtggagcaaatatcaatggcaaccaataaccaaatgtaaataaccacaaacaacaacaacaatatagacctaatctataaaccaagtgcatagcaaaacc 46860705  T
Q  519 acaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    |||||| ||| || | |||||||||||||||| ||  ||||||||||||    
T  46860704 acaatctaaccaaaggataaacaagataaagagag-taaagaaaagata 46860657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 248 - 375
Target Start/End: Complemental strand, 10480571 - 10480444
Alignment:
Q  248 atcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgtttagttattt 347  Q
    ||||||||| |||||| |||||| ||||||||| |||||||||| |||||||||  |||| |  |||||||||| |  ||||||||||||||||||||||    
T  10480571 atcatatatttcaaatcctttcttgataatatgcatattatcaagaatcaaatgtcaaatcgactgagaaatgaccgtttaaatgattgtttagttattt 10480472  T
Q  348 atattgagaaagatatttttattgatat 375  Q
    |||| |||||| |  |||| ||||||||    
T  10480471 atatagagaaaaaggttttaattgatat 10480444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 460 - 567
Target Start/End: Complemental strand, 54593995 - 54593886
Alignment:
Q  460 aaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatcc-aactaaggaataaacaagataaagaaag-caaa 557  Q
    |||||||||||| ||||| | ||||||| |||||| ||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||| || | ||    
T  54593995 aaccacaagcaataacaagaatatagacatagtctataaaccatgtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagactaa 54593896  T
Q  558 agaaaagata 567  Q
    ||||||||||    
T  54593895 agaaaagata 54593886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 411 - 550
Target Start/End: Original strand, 43403566 - 43403709
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtg 506  Q
    ||||||| |||||||||||| ||||||||||||||||| || |||| |||||   |||||||||| || || | | |||| ||| |||  ||| ||||||    
T  43403566 aaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccacaagcaataataacaatctagatctaatctagaaaacaagtg 43403665  T
Q  507 catagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||||||||| ||| || | ||||||||||||||||    
T  43403666 catagcaaaaccacaatctaaccaaaggataaacaagataaaga 43403709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 419 - 550
Target Start/End: Original strand, 49199299 - 49199434
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaa 514  Q
    |||||||||||| ||||||||||||||||| || |||| |||||   |||||||||| ||||| | | |||| ||| |||  ||| ||||||||||||||    
T  49199299 atgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaa 49199398  T
Q  515 aaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||| ||| || | ||||||||||||||||    
T  49199399 aaccacaatctaaccaaaggataaacaagataaaga 49199434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 34491525 - 34491459
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaa 477  Q
    |||||||||||||||||||| |||| ||||||||||||||| |||| | ||||||||||||||||||    
T  34491525 aaactataatgtgtggagcaagtattaatggcaaccaacaaccaaaatgaaccacaagcaacaacaa 34491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 377 - 477
Target Start/End: Complemental strand, 40913646 - 40913545
Alignment:
Q  377 tgttgtgaatgcgtactcaaaat-cacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaac 475  Q
    |||||||||| || ||||||| | |||||||  | |||| |||||||| |||||| ||||||||||| |||||||| ||||||||||||||||| |||||    
T  40913646 tgttgtgaattcggactcaaatttcacaccaatacaaacaataatgtgcggagcaagtatcaatggcgaccaacaaccaaagtaaaccacaagccacaac 40913547  T
Q  476 aa 477  Q
    ||    
T  40913546 aa 40913545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 501 - 595
Target Start/End: Complemental strand, 4570202 - 4570107
Alignment:
Q  501 caagtgcatagcaaaaccacaatcc-aactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||||||  |||||||||||| ||| ||   |||  |||||||||||||||||    
T  4570202 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttc 4570107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 412 - 550
Target Start/End: Original strand, 43401624 - 43401766
Alignment:
Q  412 aactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgc 507  Q
    |||||| || ||||||||| ||||||||||||||||| || |||| |||||   |||||||||| ||||| | | |||| ||| |||  ||| |||||||    
T  43401624 aactatgatctgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgc 43401723  T
Q  508 atagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    ||||||||| ||||||| ||| || | ||||||||||||||||    
T  43401724 atagcaaaatcacaatctaaccaaaggataaacaagataaaga 43401766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 251 - 376
Target Start/End: Original strand, 11027175 - 11027300
Alignment:
Q  251 atatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgtttagttatttata 350  Q
    ||||||||||| || |||||  ||||||||||||||||||| |||| ||||  |||| |  ||||| ||||    |||||| ||| ||||||||||||||    
T  11027175 atatatctcaacttttttcttcataatatgaatattatcaagaatcgaatgtgaaatcgaatgagagatgactgcttaaataattatttagttatttata 11027274  T
Q  351 ttgagaaagatatttttattgatatt 376  Q
    | | | ||||||||||||||||||||    
T  11027275 tagtgtaagatatttttattgatatt 11027300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 7729590 - 7729635
Alignment:
Q  114 catgtgtgggcttgtgcctacacaaaatttttagaaacactttttt 159  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  7729590 catgtgtgggcttgtgcctacacaaaaattttagaaacactatttt 7729635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 550
Target Start/End: Complemental strand, 5270689 - 5270571
Alignment:
Q  433 tatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatag-tatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaa 531  Q
    |||||||| ||||||| ||  |||  |||||||||||||||||||||| | |||| ||| |||   ||||||||| |  |||||||||||||| ||| ||    
T  5270689 tatcaatgacaaccaataacaaaaaaaaaccacaagcaacaacaatagatctagatctaatctagcaaccaagtgtaatgcaaaaccacaatcgaaccaa 5270590  T
Q  532 ggaataaacaagataaaga 550  Q
     ||||||||| ||||||||    
T  5270589 agaataaacatgataaaga 5270571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 567
Target Start/End: Original strand, 55301888 - 55301957
Alignment:
Q  497 aaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    ||||||||||||||||||| ||||||| |||| || | |||||||||||||||| ||  ||||||||||||    
T  55301888 aaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagag-taaagaaaagata 55301957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 40913544 - 40913495
Alignment:
Q  501 caagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||||||||||||||| ||| || | ||||||||||||||||    
T  40913544 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaaga 40913495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 5236254 - 5236308
Alignment:
Q  374 atttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggag 428  Q
    ||||||||||||| || ||||||||||||||||  | ||||||| ||||||||||    
T  5236254 atttgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggag 5236308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 430
Target Start/End: Original strand, 22834806 - 22834860
Alignment:
Q  376 ttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    ||||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  22834806 ttgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 22834860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 27305519 - 27305570
Alignment:
Q  377 tgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||||||||| || |||||||||||||||  |||||||||| ||||||||||||    
T  27305519 tgttgtgaattcggactcaaaatcacacc--aataaactatgatgtgtggagca 27305570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 550
Target Start/End: Complemental strand, 36019178 - 36019047
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaacc 518  Q
    |||||||| ||||||||  ||||||| ||||||| |||||   ||||||||||||| || | | |||| ||| |||  ||| ||||||  || |||||||    
T  36019178 gtggagcaagtatcaatcacaaccaataatcaaatgtaaattaccacaagcaacaataacaatctagatctaatctagaaaacaagtgtttaacaaaacc 36019079  T
Q  519 acaatccaactaaggaataaacaagataaaga 550  Q
    |||||| ||| || | ||||||||||||||||    
T  36019078 acaatctaaccaaaggataaacaagataaaga 36019047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 411 - 595
Target Start/End: Original strand, 6359780 - 6359966
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcata 510  Q
    ||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||    
T  6359780 aaactatgatgtgtggagcaagtatcaatgggaaccaacaaccaaagtaaaccacaagcaacaacaataatatatacctagtctataaaccaagtgcata 6359879  T
Q  511 gcaaaaccacaatccaac-taaggaataaacaagataaagaaagcaaaagaaaagat-accacncccagaaaatgttgacccagttc 595  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || || ||||| ||||||||||||||    
T  6359880 gcaaaaccacaatccaacttaaggaataaacaagataaagaaagcaaatgaaaagataacaacaccaagaaattgttgacccagttc 6359966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 391 - 550
Target Start/End: Original strand, 2360786 - 2360946
Alignment:
Q  391 actcaaaat-cacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacct 489  Q
    ||||||||| |||||||  | ||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||  | |||||||||    
T  2360786 actcaaaattcacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaacaaccaaagtaaatcacaagcaacaacatcaatatagacct 2360885  T
Q  490 agtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||  |||||||||||||| |||||||||||| |||| |||||||||||||||||||||    
T  2360886 agtctagaaaccaagtgcatatcaaaaccacaattcaaccaaggaataaacaagataaaga 2360946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 419 - 595
Target Start/End: Original strand, 32357893 - 32358068
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaacc 518  Q
    |||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||| |||| |||||| |||||||    
T  32357893 atgtgtggagtaagtatcaatgacaaccaacaaccaaagtaaaccacaagcaacaacaataatatagacctagtttataatccaattgcataacaaaacc 32357992  T
Q  519 acaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    ||||| |||  |||||||||||||| |||||| ||  |||||||||||| ||   |||  ||||||| |||||||||    
T  32357993 acaattcaagcaaggaataaacaagttaaagagag-taaagaaaagataacaacaccaagaaatgttcacccagttc 32358068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 376 - 567
Target Start/End: Original strand, 4510338 - 4510534
Alignment:
Q  376 ttgttgtgaatgcgtactcaaaat-cacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatca-----aagtaaaccacaagc 469  Q
    ||||||||||| || ||||||| | |||||||  | ||||||| |||||||||||| ||||||||||||||||| || ||     || ||||||||||||    
T  4510338 ttgttgtgaattcggactcaaatttcacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaagc 4510437  T
Q  470 aacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    || ||||| | |||||||||||||| |||| |||||||||||||||| |||||| ||||||| | ||||||||||| |||| ||  ||||||||||||    
T  4510438 aataacaacaatatagacctagtctataaatcaagtgcatagcaaaaacacaattcaactaatggataaacaagatcaagagag-taaagaaaagata 4510534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 376 - 567
Target Start/End: Original strand, 4512180 - 4512376
Alignment:
Q  376 ttgttgtgaatgcgtactcaaaat-cacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatca-----aagtaaaccacaagc 469  Q
    ||||||||||| || ||||||| | |||||||  | ||||||| |||||||||||| ||||||||||||||||| || ||     || ||||||||||||    
T  4512180 ttgttgtgaattcggactcaaatttcacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaagc 4512279  T
Q  470 aacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    || ||||| | |||||||||||||| |||| |||||||||||||||| |||||| ||||||| | ||||||||||| |||| ||  ||||||||||||    
T  4512280 aataacaacaatatagacctagtctataaatcaagtgcatagcaaaaacacaattcaactaatggataaacaagatcaagagag-taaagaaaagata 4512376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 419 - 567
Target Start/End: Original strand, 34310548 - 34310701
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaa----accacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagca 513  Q
    |||||||||||| ||||||||| ||||||| || |||| ||||    ||||||||||| ||||| | |||||||||||||| ||||||||||||||||||    
T  34310548 atgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaatagaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagca 34310647  T
Q  514 aaaccacaatccaa-ctaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    |||||||||| ||| | ||||||||||||||||||||| ||  ||||||||||||    
T  34310648 aaaccacaattcaaccaaaggaataaacaagataaagagag-taaagaaaagata 34310701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 423 - 547
Target Start/End: Original strand, 8359157 - 8359282
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccaca 521  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| | | |||| ||| |||  ||| |||||||||||||||||||||    
T  8359157 gtggagcaagtatcaatggcaaccaacaatcaaaagtaaatcacaagcaacaacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccaca 8359256  T
Q  522 atccaactaaggaataaacaagataa 547  Q
    ||| ||| || | |||||||||||||    
T  8359257 atctaaccaaaggataaacaagataa 8359282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 458 - 550
Target Start/End: Original strand, 4508584 - 4508676
Alignment:
Q  458 taaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||| |||| || | ||||||||||||||||    
T  4508584 taaaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaaga 4508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 203 - 378
Target Start/End: Original strand, 23756509 - 23756685
Alignment:
Q  203 ggcccacact-aacacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatg 301  Q
    |||||||||| || |||||| ||||||   ||||| | ||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||    
T  23756509 ggcccacacttaatacaaatcatttctcttttggcacgcacctatcatcatatatctcaaattctttcttgataatacgaatattatcaagaatcagatg 23756608  T
Q  302 caaaattgtgtgagaaatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgatatttg 378  Q
    | |||||  ||| || || |   ||||| |||| |||||||| ||||||| || ||| |||||||||||||||||||    
T  23756609 cgaaatttagtgggagattactggttaagtgatcgtttagttgtttatatagaaaaatatatttttattgatatttg 23756685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 423 - 567
Target Start/End: Original strand, 48599175 - 48599320
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaa-caatcaaagtaaaccacaagcaacaacaatagtata--gacctagtctttaaaccaagtgcatagcaaaacca 519  Q
    |||||||| ||||||||| ||||||| |||  || || |||||||| ||||||||||| ||||  |||||||||| ||| | ||||||| |||||||| |    
T  48599175 gtggagcaagtatcaatgacaaccaaacaaaaaatgttaaccacaaacaacaacaataatatatagacctagtctataatc-aagtgcacagcaaaacta 48599273  T
Q  520 caatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    ||||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  48599274 caatccaaccaaggaataaacaagataaagagag-taaagaaaagata 48599320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 595
Target Start/End: Complemental strand, 3259322 - 3259149
Alignment:
Q  425 ggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccac 520  Q
    |||||| ||||||||| ||||||| || |||| |||||   |||||||||| ||||| | | |||| ||| |||  ||| || | |||||||||||||||    
T  3259322 ggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacacgggcatagcaaaaccac 3259223  T
Q  521 aatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    |||||||| ||||||||||||||||||||| ||  |||||||||||| ||   |||| ||||||| |||||||||    
T  3259222 aatccaaccaaggaataaacaagataaagagag-taaagaaaagataacaacaccaggaaatgttcacccagttc 3259149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 30814773 - 30814669
Alignment:
Q  374 atttgttgtgaatgcgtactcaaaat-cacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaac 472  Q
    ||||||||||||| || ||||||| | |||||||  | ||| ||| |||||||||||| |||||||||||||||||||| |||| | |||||||||||||    
T  30814773 atttgttgtgaattcggactcaaatttcacaccagtacaaaatatgatgtgtggagcaagtatcaatggcaaccaacaaccaaaattaaccacaagcaac 30814674  T
Q  473 aacaa 477  Q
    |||||    
T  30814673 aacaa 30814669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 22270286 - 22270220
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaa 477  Q
    ||||||| |||||||||||| |||||||||||||||||||| |||| | ||||||||||||||||||    
T  22270286 aaactatgatgtgtggagcaagtatcaatggcaaccaacaaccaaaattaaccacaagcaacaacaa 22270220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 497 - 550
Target Start/End: Original strand, 22328306 - 22328359
Alignment:
Q  497 aaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||||| ||||||||||||| ||| || ||||||||||||||||||    
T  22328306 aaaccaagtgcataacaaaaccacaatcgaacaaaagaataaacaagataaaga 22328359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 550
Target Start/End: Complemental strand, 2390615 - 2390484
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaacc 518  Q
    |||||||| ||||||||| ||||||| || |||| |||||   |||||| ||| ||||| | | |||| ||| |||  ||| ||| || |||||||||||    
T  2390615 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataaccacaatcaataacaacaatctagatctaatctagaaaacaaatgtatagcaaaacc 2390516  T
Q  519 acaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||| || | ||||||||||||||||    
T  2390515 acaatccaacaaaaggataaacaagataaaga 2390484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 430
Target Start/End: Original strand, 41648812 - 41648867
Alignment:
Q  375 tttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  41648812 tttgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 41648867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 6430497 - 6430431
Alignment:
Q  376 ttgttgtgaatgcgtactcaaaa-tcacaccataataaactataatgtgtggagcatgtatcaatgg 441  Q
    ||||||||||| || |||||||| ||||||||  | ||||||| |||||||||||| ||||||||||    
T  6430497 ttgttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaagtatcaatgg 6430431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 25616223 - 25616170
Alignment:
Q  377 tgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||||||||| |||||||||||||||||||  | ||||||| |||| |||||||    
T  25616223 tgttgtgaatacgtactcaaaatcacaccaatacaaactatgatgtatggagca 25616170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 38671025 - 38671078
Alignment:
Q  377 tgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  38671025 tgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 38671078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 399 - 563
Target Start/End: Original strand, 47255155 - 47255319
Alignment:
Q  399 tcacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaa 498  Q
    ||||||||  ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||    
T  47255155 tcacaccaatataaactatgatgtgtggagcaggtatcaatggcaaccaacaaccaaagtaaaccataagcaacaacaataatatagacctagtctataa 47255254  T
Q  499 accaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaa 563  Q
    |||||||||||||||||||||||||| ||| || | |||||||||||||||| || |||||||||    
T  47255255 accaagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagtaaaagaaaa 47255319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 419 - 595
Target Start/End: Original strand, 13548838 - 13549014
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaacc-aagtgcatagcaaaac 517  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||    
T  13548838 atgtgtggagcaagtatcaatgacaaccaacaaccaaagtaaaccacaagcaacaacaataatatagacctagtctataaaccaaagtgcatagcaaaac 13548937  T
Q  518 cacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    ||||||||||| || |||||||||||||||||| ||  |||||||||||| ||   |||  ||||||| |||||||||    
T  13548938 cacaatccaaccaaagaataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacccagttc 13549014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 415 - 595
Target Start/End: Original strand, 13546927 - 13547103
Alignment:
Q  415 tataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacc--tagtctttaaaccaagtgcatagc 512  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||  |||| | ||||||||||     ||    
T  13546927 tataatgtgtggagcaagtatcaatggcaaccaacaaccaaagtaaaccacaagcaacaacaataatatagacctatagtttataaaccaagt-----gc 13547021  T
Q  513 aaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    |||||||||||||||| || |||||||||||||||||| ||  |||||||||||| ||   |||  ||||||| |||||||||    
T  13547022 aaaaccacaatccaaccaaagaataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacccagttc 13547103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 425 - 520
Target Start/End: Complemental strand, 194845 - 194750
Alignment:
Q  425 ggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccac 520  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  194845 ggagcaagtatcaatggcaaccaacaaccaaagtaaaccacaagcaacaacaataatatagacctagtctataaaccaagtgcatatcaaaaccac 194750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 239 - 373
Target Start/End: Complemental strand, 30294298 - 30294164
Alignment:
Q  239 acacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgtt 338  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||  |||| |||| |  ||||| |||||| |||||| |||||||    
T  30294298 acacatatcatcatatatcttaaattctttcttgatagtatgaatattatcaagaatctgatgcgaaatcgaatgagagatgatcggttaaaagattgtt 30294199  T
Q  339 tagttatttatattgagaaagatatttttattgat 373  Q
    |||||||||||||  | ||||||||||||||||||    
T  30294198 tagttatttatataaaaaaagatatttttattgat 30294164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 426 - 547
Target Start/End: Original strand, 31925553 - 31925674
Alignment:
Q  426 gagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatcc 525  Q
    ||||| ||||||||| |||||||||| |||| ||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  31925553 gagcaagtatcaatgacaaccaacaaccaaattaa-ccacaagcaataacaataatatagacctagtctataaaccaagtgcatagcaaaaccacaatcc 31925651  T
Q  526 aactaaggaataa-acaagataa 547  Q
    ||| || |||||| |||||||||    
T  31925652 aaccaaagaataatacaagataa 31925674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 411 - 548
Target Start/End: Original strand, 42297803 - 42297939
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcata 510  Q
    ||||||| |||||||||| | |||||||||||||||||||| |||| ||| ||| |||||| ||||||| |||| ||| ||||| |||||||||||||||    
T  42297803 aaactatgatgtgtggagaaagtatcaatggcaaccaacaaccaaattaa-ccataagcaataacaataatatataccaagtctataaaccaagtgcata 42297901  T
Q  511 gcaaaaccacaatccaactaaggaataaacaagataaa 548  Q
    |||||| ||||||||||| ||  |||||||||||||||    
T  42297902 gcaaaatcacaatccaaccaaataataaacaagataaa 42297939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 419 - 550
Target Start/End: Complemental strand, 11349034 - 11348898
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaa 514  Q
    |||||||||||| ||||||||| |||  || ||||||| |||||   |||||||||| ||||| | |||||||||||||| |||||||||||||||||||    
T  11349034 atgtgtggagcaagtatcaatgacaattaataatcaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaa 11348935  T
Q  515 aaccacaatcc-aactaaggaataaacaagataaaga 550  Q
    ||||||||||| ||  |||||||||||||||||||||    
T  11348934 aaccacaatccaaagcaaggaataaacaagataaaga 11348898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 419 - 595
Target Start/End: Original strand, 37876600 - 37876780
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatca-----aagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagca 513  Q
    |||||||||||| ||||||||||||||||| || ||     || |||||||||||||| ||||| | |||||||||||||| |||||||||||||||| |    
T  37876600 atgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaagcaaaaacaacactatagacctagtctataaaccaagtgcatagaa 37876699  T
Q  514 aaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    |||||||||| |||| ||   |||||||||||||||| ||  |||||||||||| ||   |||  ||||||| |||||||||    
T  37876700 aaaccacaattcaaccaaatgataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacccagttc 37876780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 411 - 550
Target Start/End: Complemental strand, 29136589 - 29136446
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaag-taa---accacaagcaacaacaatagtatagacctagtctttaaaccaagtg 506  Q
    ||||||| |||||||||||| ||| ||||| ||||||| || ||||  |||   ||||||||||| ||||| |  ||||||||||||| |||||||||||    
T  29136589 aaactatgatgtgtggagcaagtaccaatgacaaccaataaccaaatataactaaccacaagcaataacaacaaaatagacctagtctataaaccaagtg 29136490  T
Q  507 catagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||||||||| ||| || | ||||||||||||||||    
T  29136489 catagcaaaaccacaatctaaccaaaggataaacaagataaaga 29136446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 460 - 595
Target Start/End: Complemental strand, 37168584 - 37168452
Alignment:
Q  460 aaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaag 559  Q
    |||| ||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||  ||||    
T  37168584 aacctcaagcaacaacaata-tatagacctagtctataatc-aagtgcatagcaaaaccacaatcaaaccaaggaataaacaagataaagagag-taaag 37168488  T
Q  560 aaaagataccacncccagaaaatgttgacccagttc 595  Q
    |||||||| ||   |||  ||||||| |||||||||    
T  37168487 aaaagataacaacaccaagaaatgttcacccagttc 37168452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 469 - 550
Target Start/End: Original strand, 7482121 - 7482200
Alignment:
Q  469 caacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    ||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7482121 caacaacaata-tatagacctagtctataatc-aagtgcatagcaaaaccacaatccaaccaaggaataaacaagataaaga 7482200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 422 - 567
Target Start/End: Complemental strand, 34603894 - 34603745
Alignment:
Q  422 tgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaaca---atagtatagacctagtctttaaaccaagtgcatagcaa 514  Q
    ||||||||| ||||||||| ||||||| ||||||| |||||   || |||||| |||||   ||| |||||||||||||| ||| | |||||||||||||    
T  34603894 tgtggagcaagtatcaatgacaaccaataatcaaatgtaaataacctcaagcaccaacagcaata-tatagacctagtctataatc-aagtgcatagcaa 34603797  T
Q  515 aaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    |||||||||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  34603796 aaccacaatccaaccaaggaataaacaagataaagagag-taaagaaaagata 34603745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 238 - 376
Target Start/End: Original strand, 21487374 - 21487507
Alignment:
Q  238 cacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgt 337  Q
    |||||||||||||| |||||||||||||||| | |||||||||||||||||     |||| ||| |||||    ||||| ||||||||||||||||||||    
T  21487374 cacacatatcatca-atatctcaaattcttttttgataatatgaatattat-----atcagatgtaaaatcaaatgagagatgatcagttaaatgattgt 21487467  T
Q  338 ttagttatttatattgagaaagata-tttttattgatatt 376  Q
    ||| |||||||||| || ||| ||| ||||||||||||||    
T  21487468 ttaattatttatatagataaaaatattttttattgatatt 21487507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 218 - 376
Target Start/End: Complemental strand, 27850668 - 27850509
Alignment:
Q  218 aaattatttcttccttggctcacacatatcatcatatatctcaaattcttt-ctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgaga 316  Q
    |||||||||||   ||||| ||||| |||||| |||||| ||||||| ||| || |||||||||||||||||||| |||   ||||||||  |  |   |    
T  27850668 aaattatttctcttttggcccacacttatcattatatatatcaaatttttttcttgataatatgaatattatcaagaattggatgcaaaagcgaatataa 27850569  T
Q  317 aatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgatatt 376  Q
     |||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||    
T  27850568 tatgatcagttaaatgattgtttagttatttatatagtgaaagacatttttattaatatt 27850509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 567
Target Start/End: Complemental strand, 193849 - 193794
Alignment:
Q  512 caaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  193849 caaaaccacaatccaaccaaggaataaacaagataaataaagcaaaagagaagata 193794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 37245013 - 37244963
Alignment:
Q  325 gttaaatgattgtttagttatttatattgagaaagatatttttattgatat 375  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||||    
T  37245013 gttaaatgattgtttaattatttatattgagaacaatatttttattgatat 37244963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 419 - 550
Target Start/End: Original strand, 37032903 - 37033038
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaa 514  Q
    ||||||||||||  |||||||||||||||| || |||| |||||   |||||||||| ||||| | | |||| ||| |||  ||| ||||||||||||||    
T  37032903 atgtgtggagcaaatatcaatggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaa 37033002  T
Q  515 aaccacaatccaactaaggaataaacaagataaaga 550  Q
    || |||| || ||| || | ||||||||||||||||    
T  37033003 aatcacactctaaccaaaggataaacaagataaaga 37033038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 262
Target Start/End: Original strand, 46396399 - 46396541
Alignment:
Q  118 tgtgggcttgtgcctacacaaaatttttagaaac-acttttttagtagcatcaatatgtatcaatagttgatattttgaccatttgggcccacac-taac 215  Q
    |||||||||||||| ||||||||||||||||||| | |||||| |||| ||    |||||||||||||||| ||||||| ||  | ||  ||||| || |    
T  46396399 tgtgggcttgtgcccacacaaaatttttagaaacaatttttttggtagtat---aatgtatcaatagttgacattttgatcacat-ggatcacacttatc 46396494  T
Q  216 acaaattatttcttccttggctcacacatatcatcatatatctcaaa 262  Q
    | |||| ||||||  |||||| ||||| |||||||||||||||||||    
T  46396495 agaaatcatttctctcttggcccacacttatcatcatatatctcaaa 46396541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 505 - 591
Target Start/End: Complemental strand, 19754737 - 19754653
Alignment:
Q  505 tgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgaccca 591  Q
    |||||||||||||||||||||||| || | |||||||||||||||| ||  |||||||||||| |||  ||| ||| ||||||||||    
T  19754737 tgcatagcaaaaccacaatccaacaaaaggataaacaagataaagagag-taaagaaaagataacaca-ccaaaaattgttgaccca 19754653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 548
Target Start/End: Complemental strand, 47115502 - 47115373
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaac---cacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaacc 518  Q
    |||||||| ||||||||| ||| ||||||||||| |||||    ||||||||| ||||| | | |||| ||| |||  ||| |||||||||| |||||||    
T  47115502 gtggagcaagtatcaatgacaatcaacaatcaaatgtaaataatcacaagcaataacaacaatctagatctaatctagaaaacaagtgcataacaaaacc 47115403  T
Q  519 acaatccaactaaggaataaacaagataaa 548  Q
    |||||| ||| || | ||||||||||||||    
T  47115402 acaatctaacaaaaggataaacaagataaa 47115373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 19752997 - 19752931
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaa 477  Q
    ||||||| ||||| | |||| |||||||||||||||||||| |||| | ||||||||||||| ||||    
T  19752997 aaactatgatgtgcgaagcaagtatcaatggcaaccaacaaccaaaattaaccacaagcaacgacaa 19752931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 30294639 - 30294581
Alignment:
Q  93 agggacgggtgtatgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaac 151  Q
    ||||| || ||||||||| | |||||||| |||||||||||||| ||||||||||||||    
T  30294639 agggatggatgtatgttgatccatgtgtgtgcttgtgcctacactaaatttttagaaac 30294581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 19752930 - 19752881
Alignment:
Q  501 caagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    ||||||||||| |||||||||||||||| || | ||||||||||||||||    
T  19752930 caagtgcatagtaaaaccacaatccaacaaaaggataaacaagataaaga 19752881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 42772377 - 42772340
Alignment:
Q  328 aaatgattgtttagttatttatattgagaaagatattt 365  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42772377 aaatgattgtttagttatttatatagagaaagatattt 42772340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 8550581 - 8550637
Alignment:
Q  374 atttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    ||||||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  8550581 atttgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 8550637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 430
Target Start/End: Original strand, 50166978 - 50167033
Alignment:
Q  375 tttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||||||||||  || |||||||||||||||| || ||||||| ||||||||||||    
T  50166978 tttgttgtgaactcgaactcaaaatcacaccaaaacaaactatgatgtgtggagca 50167033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 19754807 - 19754741
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaa 477  Q
    ||||||| |||||||||||| ||||||||| |||||  |||  ||| | ||||||||||||||||||    
T  19754807 aaactatgatgtgtggagcaagtatcaatgacaacctccaactaaaattaaccacaagcaacaacaa 19754741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 19967126 - 19967172
Alignment:
Q  118 tgtgggcttgtgcctacacaaaatttttagaaacacttttttagtag 164  Q
    |||||||||||||| ||| |||||||||||||||  |||||||||||    
T  19967126 tgtgggcttgtgcccacagaaaatttttagaaacctttttttagtag 19967172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 833970 - 834023
Alignment:
Q  377 tgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  833970 tgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 834023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 44455530 - 44455477
Alignment:
Q  375 tttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggag 428  Q
    |||||||||||| |||||||||||||||||||  | ||||||| || |||||||    
T  44455530 tttgttgtgaattcgtactcaaaatcacaccaatacaaactatgatatgtggag 44455477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 411 - 595
Target Start/End: Complemental strand, 7666 - 7481
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaata--gtatagacctagtctttaaaccaagtgca 508  Q
    ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||| |||||||||||||    
T  7666 aaactatgatgtgtggagcaagtatcaatggcaaccaacaaccaaagtaaaccacaagcaacaacaataatatatagacctagtctataaaccaagtgca 7567  T
Q  509 tagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    ||||||||||||||| |||| || | |||||||||||||||| ||  |||||||||||| ||   |||  ||||||| |||||||||    
T  7566 tagcaaaaccacaattcaaccaaaggataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacccagttc 7481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 399 - 595
Target Start/End: Complemental strand, 21589284 - 21589085
Alignment:
Q  399 tcacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa----gtaaaccacaagcaacaacaatagtatagacctagtct 494  Q
    ||||||||  ||||||||| |||||||||||| |||||||||| ||||||||| ||||    || |||||||||||| ||||| | ||||||||||||||    
T  21589284 tcacaccaatataaactatgatgtgtggagcaagtatcaatggaaaccaacaaccaaaaaatgttaaccacaagcaataacaacaatatagacctagtct 21589185  T
Q  495 ttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagtt 594  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||   |||  ||||||| ||||||||    
T  21589184 ataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaggaaag-taaagaaaagataacaacaccaagaaatgttcacccagtt 21589086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 215 - 376
Target Start/End: Original strand, 18250759 - 18250921
Alignment:
Q  215 cacaaattatttcttccttggctcacacat-atcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtg 313  Q
    ||||||||||||||  |||||  ||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||    
T  18250759 cacaaattatttctctcttggtccacacattatcgtcatatatttcaaattctttcttgataatatgaatattatcaagaatcaaatgcaaaatcgcgtg 18250858  T
Q  314 agaaatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgatatt 376  Q
    ||| |||| ||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  18250859 agagatgaccagataaatgattgtttagttatttatatagagaaaaatatttttattaatatt 18250921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 371 - 477
Target Start/End: Original strand, 602897 - 603004
Alignment:
Q  371 gatatttgttgtgaatgcgtactcaaaa-tcacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagc 469  Q
    |||| ||||||||||| || |||||||| ||||||||  | ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  602897 gatacttgttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaagtatcaatggcaaccaacaatcaaaataaaccacaagc 602996  T
Q  470 aacaacaa 477  Q
    ||||||||    
T  602997 aacaacaa 603004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 419 - 550
Target Start/End: Original strand, 26829955 - 26830091
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaa 514  Q
    |||||||||||| |||||||||| |||||| || |||| |||||   |||||||||| ||||| | |||| ||||||||| |||||||||||||||||||    
T  26829955 atgtgtggagcaagtatcaatggaaaccaataaccaaatgtaaataaccacaagcaataacaacaatataaacctagtctataaaccaagtgcatagcaa 26830054  T
Q  515 aaccacaatcc-aactaaggaataaacaagataaaga 550  Q
    ||||||||||| ||  |||||||||||||||||||||    
T  26830055 aaccacaatccaaagcaaggaataaacaagataaaga 26830091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 244 - 376
Target Start/End: Complemental strand, 6822725 - 6822593
Alignment:
Q  244 tatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgtttagtt 343  Q
    |||||||||||||||||||||  |||  |||||||||||||||||||| ||||  |||  |||| |  ||||| |||||| ||||||| |||||||||||    
T  6822725 tatcatcatatatctcaaatttattcatgataatatgaatattatcaagaatcggatgtgaaatcgaatgagagatgatcggttaaataattgtttagtt 6822626  T
Q  344 atttatattgagaaagatatttttattgatatt 376  Q
    ||||||||  ||||||| |||||||||||||||    
T  6822625 atttatataaagaaagaaatttttattgatatt 6822593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 411 - 595
Target Start/End: Complemental strand, 5043970 - 5043782
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gta---aaccacaagcaacaacaata--gtatagacctagtctttaaaccaag 504  Q
    ||||||| |||||||||||| ||||||||| ||||||| || |||| |||   |||| ||||||||||||| |   |||||||||| ||| | || ||||    
T  5043970 aaactatgatgtgtggagcacgtatcaatgacaaccaataaccaaatgtaaataacctcaagcaacaacaacaatatatagacctattctat-aatcaag 5043872  T
Q  505 tgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| ||  |||||||||||| ||   |||  ||||||| |||||||||    
T  5043871 tgcatagcaaaaccacaatccaaccaagaaataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacccagttc 5043782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 411 - 567
Target Start/End: Complemental strand, 17758366 - 17758206
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtg 506  Q
    ||||||| |||||||||||| ||||||||||||||||| || |||| |||||   || ||||||| ||||| | | |||| ||| |||  ||| ||||||    
T  17758366 aaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccgcaagcaataacaacaatctagatctaatctagaaaacaagtg 17758267  T
Q  507 catagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    |||||||||||||||||| ||| || | ||||||||||||||||  | ||||| |||||||    
T  17758266 catagcaaaaccacaatctaaccaaaggataaacaagataaagagcgtaaaaggaaagata 17758206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 426 - 546
Target Start/End: Original strand, 2972777 - 2972902
Alignment:
Q  426 gagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatag-caaaaccac 520  Q
    ||||| ||||||||||||||||| ||||||| |||||   |||||| ||||||||| | |||||||||||||| ||||| ||||||||||  ||||||||    
T  2972777 gagcaagtatcaatggcaaccaataatcaaatgtaaataaccacaaacaacaacaacaatatagacctagtctataaactaagtgcatagaaaaaaccac 2972876  T
Q  521 aatccaactaaggaataaacaagata 546  Q
    |||| ||| ||   ||||||||||||    
T  2972877 aatctaaccaaatgataaacaagata 2972902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 423 - 548
Target Start/End: Complemental strand, 26800917 - 26800788
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaacc 518  Q
    |||||||| ||||||||||||||||| || |||| |||||   |||||||||| ||||| | | |||| |||||||  ||| ||||||||||||||||||    
T  26800917 gtggagcaagtatcaatggcaaccaataaccaaatgtaaattaccacaagcaataacaacaatctagatctagtctagaaaacaagtgcatagcaaaacc 26800818  T
Q  519 acaatccaactaaggaataaacaagataaa 548  Q
    |||||| ||| ||   ||||||||||||||    
T  26800817 acaatctaaccaaaagataaacaagataaa 26800788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 399 - 567
Target Start/End: Complemental strand, 17763345 - 17763173
Alignment:
Q  399 tcacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaac---cacaagcaacaacaatagtatagacctagtct 494  Q
    ||||||||  ||||||||| |||||||||||| ||||||||| ||||||| || |||| |||||    ||||| ||| ||||| | | |||| ||| |||    
T  17763345 tcacaccaatataaactatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataatcacaaacaataacaacaatctagatctaatct 17763246  T
Q  495 ttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
      | | ||||||||||||||||| |||||| ||| || | || ||||||||||||| || |||||||||||||    
T  17763245 agataacaagtgcatagcaaaactacaatctaaccaaaggatgaacaagataaagagagtaaaagaaaagata 17763173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 18250693 - 18250756
Alignment:
Q  93 agggacgggtgtatgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaacacttt 156  Q
    |||||||| || |||||||   ||||||||||||||| ||||||||||||||||||||||||||    
T  18250693 agggacggatgcatgttgggatatgtgtgggcttgtgactacacaaaatttttagaaacacttt 18250756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 33106714 - 33106823
Alignment:
Q  172 atgtatcaatagttgatattttgaccatttgggcccacactaa-cacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttct 270  Q
    |||||||||||||||| ||||||||||| ||   | ||||| | ||||||||||||||  ||||||  ||||||||  |||||||| |||||||||||||    
T  33106714 atgtatcaatagttgacattttgaccatatgattc-acacttatcacaaattatttctctcttggcctacacatatagtcatatatatcaaattctttct 33106812  T
Q  271 cgataatatga 281  Q
     ||||||||||    
T  33106813 tgataatatga 33106823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 33106820 - 33106866
Alignment:
Q  330 atgattgtttagttatttatattgagaaagatatttttattgatatt 376  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||    
T  33106820 atgattgtttagttatttatatagagaaatatatttttattgatatt 33106866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 501 - 550
Target Start/End: Original strand, 603005 - 603054
Alignment:
Q  501 caagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||||||    
T  603005 caagtgcatagtaaaaccacaatccaaccaaggcataaacaagataaaga 603054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 411 - 550
Target Start/End: Original strand, 3808530 - 3808673
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gta---aaccacaagcaacaacaatagtatagacctagtctttaaaccaagtg 506  Q
    ||||||| || ||||||||| ||||||||||||||||| ||||||| |||   ||||| |||||| | ||| | | |||| ||| |||  ||| ||| ||    
T  3808530 aaactatgatatgtggagcaagtatcaatggcaaccaataatcaaatgtaaataaccaaaagcaatagcaacaatctagatctaatctagaaaacaaatg 3808629  T
Q  507 catagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    ||||||||||||| |||| ||| || | ||||||||||||||||    
T  3808630 catagcaaaaccataatctaaccaaaggataaacaagataaaga 3808673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 11769810 - 11769891
Alignment:
Q  215 cacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatc 296  Q
    ||||||| ||||||   |||||||| | |||||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||    
T  11769810 cacaaatcatttctcttttggctcaaatatatcatcatatatctcaaattttttcttgataatataaatataatcaagaatc 11769891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 6822872 - 6822774
Alignment:
Q  95 ggacgggtgtatgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaacacttttttagtagcatcaatatgtatcaatagttgatattttg 194  Q
    |||||| ||||||||| |  ||||||||| || |||| |||| ||||||||| ||||  ||||||||||| || |  ||||||||||| |||| ||||||    
T  6822872 ggacggatgtatgttgtt--atgtgtgggtttatgccgacacgaaatttttaaaaacttttttttagtagtataataatgtatcaataattgacattttg 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 550
Target Start/End: Original strand, 22424650 - 22424795
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gta---aaccacaagcaacaacaatagtatagacctagtctttaaaccaagtg 506  Q
    ||||||| |||||||||||| |||||||||| |||||| || |||| |||   |||||||| ||||||||| | | |||| ||| | |  ||||||||||    
T  22424650 aaactatgatgtgtggagcaagtatcaatggtaaccaataaccaaatgtaaataaccacaaacaacaacaacaatctagatctaatatagaaaccaagtg 22424749  T
Q  507 cat--agcaaaaccacaatccaa-ctaaggaataaacaagataaaga 550  Q
    |||  |  |||||||||||| || |||||| ||||||||||||||||    
T  22424750 cattgaaaaaaaccacaatctaacctaagg-ataaacaagataaaga 22424795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 26954091 - 26954144
Alignment:
Q  377 tgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  26954091 tgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 26954144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 422 - 567
Target Start/End: Complemental strand, 35662767 - 35662623
Alignment:
Q  422 tgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccaca 521  Q
    ||||||||| |||||||||||||||||||| |||| | ||||| |||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||    
T  35662767 tgtggagcaagtatcaatggcaaccaacaaccaaaattaaccataagcaacaacaacaatatagacatagtctataaaccaagtgcatagcaaaaccaca 35662668  T
Q  522 atccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    ||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  35662667 atccaaccaaggaataaacaagataaagagag-taaagaaaagata 35662623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 411 - 550
Target Start/End: Complemental strand, 41639766 - 41639624
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaaccacaagcaacaacaatag---tatagacctagtctttaaaccaagtg 506  Q
    ||||||| |||||||||||| ||||||||||||||||| || |||| |||||||||||||||||||||  |   |||||||||||||| | || ||||||    
T  41639766 aaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaaccacaagcaacaacaaatgatatatagacctagtctat-aatcaagtg 41639668  T
Q  507 catagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    ||||||||||||||||| |||| || | ||||||||||||||||    
T  41639667 catagcaaaaccacaattcaaccaaaggataaacaagataaaga 41639624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 424 - 567
Target Start/End: Original strand, 55085286 - 55085427
Alignment:
Q  424 tggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaat 523  Q
    ||||||| ||||||||| ||||||||||||||| ||| | |||||||| ||||| | | |||| ||| | |  |||||||||||||||||||||||||||    
T  55085286 tggagcaagtatcaatgacaaccaacaatcaaattaa-ctacaagcaataacaacaatctagatctaatttagaaaccaagtgcatagcaaaaccacaat 55085384  T
Q  524 ccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    ||||| ||||||||||||||||||||| ||  ||||||||||||    
T  55085385 ccaaccaaggaataaacaagataaagagag-taaagaaaagata 55085427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 423 - 567
Target Start/End: Complemental strand, 379710 - 379563
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaacc 518  Q
    |||||||| |||||| |||||||||| ||||||| |||||   |||||| ||||||||| | |||||||||||||| ||||||||||||||| |||||||    
T  379710 gtggagcaagtatcagtggcaaccaataatcaaatgtaaataaccacaaacaacaacaacaatatagacctagtctataaaccaagtgcataacaaaacc 379611  T
Q  519 acaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    |||||| ||| || | |||||||||||||||| ||  ||||||||||||    
T  379610 acaatctaaccaaaggataaacaagataaagagag-taaagaaaagata 379563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 419 - 595
Target Start/End: Complemental strand, 40632779 - 40632599
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatca-----aagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagca 513  Q
    |||||| ||||| ||||||||||||||||| || ||     || |||||||||||||| ||||| | |||||||||||||| || ||||||||||| |||    
T  40632779 atgtgtagagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaagcaataacaacaatatagacctagtctatataccaagtgcatggca 40632680  T
Q  514 aaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    |||||||||| |||| || | |||||||||||||||| || |||| |||||||| ||   |||  ||||||| |||||||||    
T  40632679 aaaccacaattcaaccaaaggataaacaagataaagagagtaaaa-aaaagataacaacaccaagaaatgtttacccagttc 40632599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 422 - 567
Target Start/End: Complemental strand, 12073721 - 12073575
Alignment:
Q  422 tgtggagcatgtatcaatggcaaccaacaatcaaag--taaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaacca 519  Q
    ||||||||| |||||||||||||  ||||| ||| |  |||||||||||||||||||| | | |||| ||| |||  |||||||||||||| ||||||||    
T  12073721 tgtggagcaagtatcaatggcaataaacaaccaaggaataaaccacaagcaacaacaacaatctagatctaatctagaaaccaagtgcataacaaaacca 12073622  T
Q  520 caatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    ||||| ||| || |||||||||||||||||| ||  ||||||||||||    
T  12073621 caatctaaccaaagaataaacaagataaagagag-taaagaaaagata 12073575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 411 - 548
Target Start/End: Original strand, 50262522 - 50262664
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaa----ccacaagcaacaacaatagtata--gacctagtctttaaaccaag 504  Q
    ||||||| |||||||||||| ||||||||| |||||||||| ||||  |||    |||||||||||||||| | ||||  |||||||| | ||| | |||    
T  50262522 aaactatgatgtgtggagcaagtatcaatgacaaccaacaagcaaaaaaaattaaccacaagcaacaacaacaatatatagacctagtatgtaatc-aag 50262620  T
Q  505 tgcatagcaaaaccacaatccaactaaggaataaacaagataaa 548  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  50262621 tgcatggcaaaaccacaatccaagtaaggaataaacaagataaa 50262664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 411 - 524
Target Start/End: Complemental strand, 21688584 - 21688470
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaag-taaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcat 509  Q
    ||||||| |||||||||||| ||||||||| ||| ||||||  |||  | |||||||||||||||||||| |||||| ||||||| |||| ||| |||||    
T  21688584 aaactatgatgtgtggagcaagtatcaatgacaatcaacaactaaatattaaccacaagcaacaacaataatatagatctagtctataaatcaaatgcat 21688485  T
Q  510 agcaaaaccacaatc 524  Q
    | |||||||||||||    
T  21688484 aacaaaaccacaatc 21688470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 423 - 595
Target Start/End: Complemental strand, 26364566 - 26364390
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa---gtaaaccacaagcaacaacaatagtata--gacctagtctttaaaccaagtgcatagcaaaac 517  Q
    |||||||| ||||||||| ||| ||||||| |||   || ||| |||||||||||||| | ||||  |||||||||| |||   ||||| ||||||||||    
T  26364566 gtggagcaagtatcaatgacaatcaacaataaaaaatgttaactacaagcaacaacaacaatatatagacctagtctataatt-aagtgtatagcaaaac 26364468  T
Q  518 cacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagat-accacncccagaaaatgttgacccagttc 595  Q
    ||||||||||  ||||||||||||||||||||| ||  ||||||||||| || || || ||||| ||||||||||||||    
T  26364467 cacaatccaagcaaggaataaacaagataaagagag-taaagaaaagataacaacaccaagaaattgttgacccagttc 26364390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 423 - 546
Target Start/End: Complemental strand, 41964743 - 41964616
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaacc 518  Q
    |||||||| ||||||||||||||||||||||||| |||||   |||||||||| ||||| | | |||| ||| |||  ||| ||||||||||||||||||    
T  41964743 gtggagcaagtatcaatggcaaccaacaatcaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaacc 41964644  T
Q  519 acaatccaactaaggaataaacaagata 546  Q
    |||||| ||| || | ||||||||||||    
T  41964643 acaatctaaccaaaggataaacaagata 41964616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 419 - 567
Target Start/End: Original strand, 50673682 - 50673833
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaaccac---aagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaa 514  Q
    |||||||||||| ||||||||| ||||||| || |||| ||||| |||   |||||| ||||| | |||||| ||||||| ||| | |||||||||||||    
T  50673682 atgtgtggagcaagtatcaatgtcaaccaataaccaaatgtaaatcaccataagcaataacaacaatatagatctagtctataatc-aagtgcatagcaa 50673780  T
Q  515 aaccacaatcc-aactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    ||||||||||| ||  ||||||||||||||||||||| ||  ||||||||||||    
T  50673781 aaccacaatccaaagcaaggaataaacaagataaagagag-taaagaaaagata 50673833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 411 - 550
Target Start/End: Complemental strand, 2210060 - 2209917
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtg 506  Q
    ||||||| |||||||||||| ||||||||||||||||| || |||| |||||   |||||| ||| ||||| | | |||| ||| |||  ||| ||||||    
T  2210060 aaactatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaccacaaacaataacaacaatctagatctaatctagaaaacaagtg 2209961  T
Q  507 catagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||||||||| ||| ||   ||||||||||||||||    
T  2209960 catagcaaaaccacaatctaaccaaatgataaacaagataaaga 2209917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 567
Target Start/End: Complemental strand, 8648420 - 8648321
Alignment:
Q  469 caacaacaatagtatagacctagtcttta---aaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaaga 565  Q
    ||||||||||| |||||||||||||| |    || ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||  ||||||||||    
T  8648420 caacaacaata-tatagacctagtctatctataatcaaatgcatagcaaaaccacaatccaaccaaggaataaacaagataaagagag-taaagaaaaga 8648323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 375
Target Start/End: Complemental strand, 13035681 - 13035541
Alignment:
Q  231 cttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaa 330  Q
    |||||| ||||| ||| ||||||||| | |||| |||||| |||||||||||||||||||| ||||  |||  |||| | ||| || |||| | ||||||    
T  13035681 cttggcccacacctataatcatatatatgaaatcctttcttgataatatgaatattatcaagaatcggatgtcaaatcgagtgggagatgaccggttaaa 13035582  T
Q  331 tgattgtttagttatttatattgagaaagatatttttattgatat 375  Q
    | |||||    |||||||||| |||||| ||||||||||||||||    
T  13035581 taattgt----ttatttatatagagaaaaatatttttattgatat 13035541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 262
Target Start/End: Original strand, 26333020 - 26333161
Alignment:
Q  118 tgtgggcttgtgcctacacaaaatttttagaaacacttttttagtagcatcaatatgtatcaatagttgatattttgaccatttgggcccacac-taaca 216  Q
    |||||||||||| | |||||||||||||||||||| |||||| |||| ||    ||||||||||||||||  ||||||||| |  ||  ||||| || ||    
T  26333020 tgtgggcttgtggccacacaaaatttttagaaacaatttttttgtagtat---aatgtatcaatagttgacgttttgacca-taaggatcacacttacca 26333115  T
Q  217 caaattatttcttccttggctcacacatatcatcatatatctcaaa 262  Q
    ||||||||||||  |||||| ||||| ||| |||||||||||||||    
T  26333116 caaattatttctctcttggcccacacttattatcatatatctcaaa 26333161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 505 - 567
Target Start/End: Complemental strand, 8665651 - 8665590
Alignment:
Q  505 tgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  8665651 tgcatagcaaaaccacaatccaaccaaggaataaacaagataaagagag-taaagaaaagata 8665590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 432 - 550
Target Start/End: Complemental strand, 33990161 - 33990044
Alignment:
Q  432 gtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaa 531  Q
    ||||||||||||| ||| || |||| ||||| |||||||||||||| | | |||| ||| |||  ||||||||||||||||||| ||| |||  ||| ||    
T  33990161 gtatcaatggcaatcaataaccaaaataaac-acaagcaacaacaacaatctagatctaatctagaaaccaagtgcatagcaaatccagaattgaaccaa 33990063  T
Q  532 ggaataaacaagataaaga 550  Q
     ||||||||||||||||||    
T  33990062 agaataaacaagataaaga 33990044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 423 - 491
Target Start/End: Complemental strand, 54881629 - 54881561
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctag 491  Q
    |||||||| ||||||||| |||||||||| |||| |||||||||||||| ||||| | |||||||||||    
T  54881629 gtggagcaagtatcaatgacaaccaacaaccaaaataaaccacaagcaataacaacaatatagacctag 54881561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 35747072 - 35747025
Alignment:
Q  244 tatcatcatatatctcaaattctttctcgataatatgaatattatcaa 291  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||    
T  35747072 tatcatcatatatctcaaatcctttcttgataatatgaatattatcaa 35747025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 567
Target Start/End: Complemental strand, 6656203 - 6656138
Alignment:
Q  501 caagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    |||||||||||||||||||||||||||| || | |||||||||||||||| ||  ||||||||||||    
T  6656203 caagtgcatagcaaaaccacaatccaacaaaaggataaacaagataaagagag-taaagaaaagata 6656138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 501 - 550
Target Start/End: Original strand, 27416886 - 27416935
Alignment:
Q  501 caagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    ||||||||| |||||||||||||||||| || ||||||||||||||||||    
T  27416886 caagtgcatggcaaaaccacaatccaaccaaagaataaacaagataaaga 27416935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 469 - 550
Target Start/End: Complemental strand, 46703826 - 46703747
Alignment:
Q  469 caacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    ||||||||||| |||||||||| ||| ||| | ||||||||||||||||||||||| ||| || | ||||||||||||||||    
T  46703826 caacaacaata-tatagacctattctataatc-aagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaaga 46703747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 496 - 595
Target Start/End: Complemental strand, 54883274 - 54883174
Alignment:
Q  496 taaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagat-accacncccagaaaatgttgacccagtt 594  Q
    |||||||| |||| |||||||||||||| |||| || ||||||| |||||||||| || |||  ||||||| || || || ||||| |||||||||||||    
T  54883274 taaaccaaatgcagagcaaaaccacaattcaaccaaagaataaataagataaagagagtaaagaaaaagataacaacaccaagaaattgttgacccagtt 54883175  T
Q  595 c 595  Q
    |    
T  54883174 c 54883174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 305
Target Start/End: Original strand, 22087574 - 22087761
Alignment:
Q  115 atgtgtgggcttgtgcctacacaaaatttttagaaacacttttttagtagcatcaatatgtatcaatagttgatattttgaccatttgggcccacactaa 214  Q
    ||||||| | |||||| | ||||||||||||| ||||  |||||||||||   ||||||  | |||||||||| ||||||||||  ||  |||||||| |    
T  22087574 atgtgtgcgtttgtgcttgcacaaaatttttaaaaacctttttttagtagtg-caatat--accaatagttgacattttgaccacatga-cccacactta 22087669  T
Q  215 -cacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaa 305  Q
     |||| || ||||||   ||||||||||| ||| || ||||||||||| |  ||||| |||||||||||||||||||| |||  ||||||||    
T  22087670 tcacatatcatttctcttttggctcacacctataattatatatctcaagtcatttcttgataatatgaatattatcaagaatagaatgcaaa 22087761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 432 - 567
Target Start/End: Original strand, 26699294 - 26699427
Alignment:
Q  432 gtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaa 531  Q
    ||||||||||||||||| || |||| ||| |||||||  || |||| | | |||| ||| |||  || |||||||||||||||||||| |||  ||| ||    
T  26699294 gtatcaatggcaaccaataaccaaattaa-ccacaagacacgacaacaatctagatctaatctagaatccaagtgcatagcaaaaccataattgaaccaa 26699392  T
Q  532 ggaataaacaagataaagaaagcaaaagaaaagata 567  Q
     |||||||||||||||||| ||  ||||||||||||    
T  26699393 agaataaacaagataaagagag-taaagaaaagata 26699427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 13029122 - 13029086
Alignment:
Q  115 atgtgtgggcttgtgcctacacaaaatttttagaaac 151  Q
    |||||||||||||||||||||||||| ||||||||||    
T  13029122 atgtgtgggcttgtgcctacacaaaaattttagaaac 13029086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 6656267 - 6656201
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaa 477  Q
    ||||||| |||||||||||| ||||||||| || ||||||| |||| | |  |||||||||||||||    
T  6656267 aaactatgatgtgtggagcaagtatcaatgacatccaacaaccaaaattagacacaagcaacaacaa 6656201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 48893438 - 48893496
Alignment:
Q  372 atatttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||| |||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  48893438 atatgtgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 48893496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 550
Target Start/End: Complemental strand, 12119796 - 12119743
Alignment:
Q  497 aaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||| |||||||||||||||||||||||  || || || |||||||||||||||    
T  12119796 aaactaagtgcatagcaaaaccacaatcggaccaaagactaaacaagataaaga 12119743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 105 - 368
Target Start/End: Original strand, 14539331 - 14539591
Alignment:
Q  105 atgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaacacttttttagtagcatcaatatgtatcaatagttgatattttgaccatttggg 204  Q
    |||||| || |||||||||||||||||||||||||||||||||||||  ||||||||||| || |   |||| | ||| |||| ||||| |  |  |||     
T  14539331 atgttgctttatgtgtgggcttgtgcctacacaaaatttttagaaacttttttttagtagtataa---tgtacccataattgacattttaattacatggt 14539427  T
Q  205 cccacact-aacacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgca 303  Q
    || ||||| ||||||||| ||||||  |||||| ||||| ||| |||||||||||||||| |||||| |||| ||||||||||||||| ||||| ||||     
T  14539428 cc-acacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaatcctttcttgatagtatgaatattatcaaaaatcagatgcg 14539526  T
Q  304 aaattgtgtgagaaatgatcagttaaatgattgtttagttatttatattgagaaagatattttta 368  Q
    |||| | ||| || |||| | ||||||||||||||||||||||||||| || ||| |||||||||    
T  14539527 aaatcgagtgggagatgaccggttaaatgattgtttagttatttatatagaaaaaaatattttta 14539591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 232 - 376
Target Start/End: Complemental strand, 40381804 - 40381660
Alignment:
Q  232 ttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaat 331  Q
    ||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||  |||  |||| |  ||||| |||||| |||||||    
T  40381804 ttggcccacacatatcatcatatatctcaaattattttttgataatatgaatattatcaagaatcgcatgtgaaatcgaatgagagatgatcggttaaat 40381705  T
Q  332 gattgtttagttatttatattgagaaagatatttttattgatatt 376  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  40381704 gattgtttagttatttatatagagaaatatatttttattgatatt 40381660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 248 - 376
Target Start/End: Original strand, 42163974 - 42164102
Alignment:
Q  248 atcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgtttagttattt 347  Q
    |||||||||||| |||| ||||| |||||||||||||||||||| ||||||||   |||| |  ||||| || ||| |||||||||||||||||||||||    
T  42163974 atcatatatctctaattatttcttgataatatgaatattatcaagaatcaaataggaaatcgaatgagagataatcggttaaatgattgtttagttattt 42164073  T
Q  348 atattgagaaagatatttttattgatatt 376  Q
    |||| ||||| ||||||||||||||||||    
T  42164074 atatagagaaggatatttttattgatatt 42164102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 419 - 595
Target Start/End: Original strand, 42434825 - 42435005
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaa---gtaaaccacaagcaacaacaatagta--tagacctagtctttaaaccaagtgcatagca 513  Q
    ||||| |||||| |||||||||||||||||||| ||||   || |||||||||||||||||| | ||  |||||||||||| ||| | ||||||||||||    
T  42434825 atgtgaggagcaagtatcaatggcaaccaacaaccaaaaatgttaaccacaagcaacaacaacaatagatagacctagtctataatc-aagtgcatagca 42434923  T
Q  514 aaaccacaatcc-aactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    |||||||||||| ||  ||||||||||||||||||||||||  |||||||||||| ||   |||  ||||||| |||||||||    
T  42434924 aaaccacaatccaaagcaaggaataaacaagataaagaaag-taaagaaaagataacaacaccaagaaatgttcacccagttc 42435005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 459 - 595
Target Start/End: Complemental strand, 4283813 - 4283678
Alignment:
Q  459 aaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaa 558  Q
    ||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||| |||| || | |||||||||||||||| ||  |||    
T  4283813 aaaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaagagag-taaa 4283715  T
Q  559 gaaaagataccacncccagaaaatgttgacccagttc 595  Q
    ||||||||| ||   |||  ||||||| |||||||||    
T  4283714 gaaaagataacaacaccaagaaatgttcacccagttc 4283678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 419 - 595
Target Start/End: Complemental strand, 18655736 - 18655554
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaac---cacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaa 514  Q
    ||||||||||||  |||||||| ||||||| || |||| |||||    ||||||||| ||||| | |||||| ||||||| |||||||||||||||||||    
T  18655736 atgtgtggagcaaatatcaatgacaaccaataaccaaatgtaaataaacacaagcaataacaacaatatagatctagtctataaaccaagtgcatagcaa 18655637  T
Q  515 aaccacaatcc-aactaaggaataaacaagataaagaaag-caaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    ||||||||||| ||  ||||||||||||||||||||| ||   |||||||||||| ||   ||| |||||||| |||||||||    
T  18655636 aaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaagataacaacaccaaaaaatgttcacccagttc 18655554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 501 - 595
Target Start/End: Original strand, 10930118 - 10930213
Alignment:
Q  501 caagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagat-accacncccagaaaatgttgacccagttc 595  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||| || || || ||||| ||||||||||||||    
T  10930118 caagtgcatagcaaaaccacaatccaacaaaagaataaacaagataaagggagcaaaagaaaagataacaacaccaagaaattgttgacccagttc 10930213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 376
Target Start/End: Original strand, 37728355 - 37728493
Alignment:
Q  238 cacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgt 337  Q
    ||||| ||||||||||||| | ||||  ||| | ||| |||||||||| ||||| ||| | ||||||||| | ||| || |||    |||||||||| ||    
T  37728355 cacacctatcatcatatattttaaatcattttttgatgatatgaatatgatcaagaattagatgcaaaatcgagtgtgagatggctggttaaatgatcgt 37728454  T
Q  338 ttagttatttatattgagaaagatatttttattgatatt 376  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  37728455 ttagttatttatatagagaatgatatttttattgatatt 37728493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 460 - 550
Target Start/End: Complemental strand, 3772480 - 3772390
Alignment:
Q  460 aaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||||||||| | | ||||  || |||  ||| |||||||||||||||||||||||| ||| || ||||||||||||||||||    
T  3772480 aaccacaagcaacaacaacaatctagatttaatctagaaatcaagtgcatagcaaaaccacaatctaaccaaagaataaacaagataaaga 3772390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 426 - 544
Target Start/End: Complemental strand, 40329102 - 40328980
Alignment:
Q  426 gagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccaca 521  Q
    ||||| ||||||||| |||||||||| |||| |||||   |||||||||| ||||| ||| |||| ||| |||  ||| |||||||||||||||||||||    
T  40329102 gagcaagtatcaatgacaaccaacaaccaaatgtaaataaccacaagcaataacaacagtctagatctaatctagaaaacaagtgcatagcaaaaccaca 40329003  T
Q  522 atccaactaaggaataaacaaga 544  Q
    ||| ||| || | ||||||||||    
T  40329002 atctaaccaaaggataaacaaga 40328980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 550
Target Start/End: Complemental strand, 11384273 - 11384183
Alignment:
Q  460 aaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||| ||||| | | |||| ||| |||  ||| |||||||||||||||||||||||| ||| || | ||||||||||||||||    
T  11384273 aaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaaga 11384183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 40221992 - 40221943
Alignment:
Q  501 caagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||||    
T  40221992 caagtgcatagcaaaaccacaatccaaccaaagaatgaacaagataaaga 40221943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 501 - 550
Target Start/End: Original strand, 2999723 - 2999772
Alignment:
Q  501 caagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||||||| ||||||| ||| || ||||||||||||||||||    
T  2999723 caagtgcatagcaaaatcacaatctaaccaaagaataaacaagataaaga 2999772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 262
Target Start/End: Complemental strand, 1336424 - 1336280
Alignment:
Q  118 tgtgggcttgtgcctacacaaaatttttagaaaca--cttttttagtagcatcaatatgtatcaatagttgatattttgaccatttgggcccacac-taa 214  Q
    |||||||||||||| ||||||| ||||||||||||   |||||| |||| || ||| ||||||||||||||| ||||||| ||  | |  |||||| ||     
T  1336424 tgtgggcttgtgcccacacaaagtttttagaaacaattttttttggtagtat-aat-tgtatcaatagttgacattttgatcacat-gaaccacacttat 1336328  T
Q  215 cacaaattatttcttccttggctcacacatatcatcatatatctcaaa 262  Q
    ||||||  ||||||  |||||| ||||| |||||||||||||||||||    
T  1336327 cacaaaacatttctctcttggcccacacttatcatcatatatctcaaa 1336280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 18106147 - 18106193
Alignment:
Q  602 atgagttcttacaagagatacaa-tgagttacangaaattagcttca 647  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  18106147 atgagttcttacaaaagatacaaatgagttacaagaaattagcttca 18106193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 33352518 - 33352465
Alignment:
Q  377 tgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||||||||| |||||||||||||||||||  ||||| ||| || |||||||||    
T  33352518 tgttgtgaattcgtactcaaaatcacaccaatataaattatgatatgtggagca 33352465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 423 - 567
Target Start/End: Original strand, 27637454 - 27637598
Alignment:
Q  423 gtggagcatgtatcaatggcaaccaacaatcaaa-gtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccaca 521  Q
    |||||||| |||| ||||| || |||||| |||| ||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||    
T  27637454 gtggagcaagtattaatggtaatcaacaaccaaaagtaaatcacaagcaacaacaacaatatagacctagtctataaaccaagtgcatagcaaaaccaca 27637553  T
Q  522 atccaactaaggaataaacaagataaagaaagcaaaagaaaagata 567  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||||    
T  27637554 atccaactaaggaataaacaagataaagagag-taaagaaaagata 27637598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 93 - 373
Target Start/End: Complemental strand, 15727218 - 15726938
Alignment:
Q  93 agggacgggtgtatgttggttcatgtgtgggcttgtgcctacacaaaattttta-gaaacactt--ttttagtagcatcaatatgtatcaatagttgata 189  Q
    |||||||| ||||||||  | ||| ||||||||||||||||||| ||||||||| |||||  ||  ||||||||| || |   ||||||||||||||| |    
T  15727218 agggacggatgtatgttcatccatatgtgggcttgtgcctacactaaatttttaagaaactattatttttagtagtataa---tgtatcaatagttgaca 15727122  T
Q  190 ttttgaccatttgggcccacactaa-cacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattat 288  Q
    |||||| |||  |  || ||| | | |||||||||||| |   ||||| |||| |||| ||||||||||||||||| ||||| |||| ||||||||||||    
T  15727121 ttttgatcatacgatcc-acatttatcacaaattatttgtattttggcccacatatataatcatatatctcaaattatttcttgatagtatgaatattat 15727023  T
Q  289 caataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgat 373  Q
    ||| ||||  |||||||||||  ||||| |||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  15727022 caagaatctgatgcaaaattgaatgagagatgatcggttaaatgattgtttagttatttatataaagaaatatatttttattgat 15726938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 114 - 373
Target Start/End: Complemental strand, 15811041 - 15810783
Alignment:
Q  114 catgtgtgggcttgtgcctacacaaaatttttagaaacactt--ttttagtagcatcaatatgtatcaatagttgatattttgaccatttgggcccacac 211  Q
    ||||||||||||||||||||||  ||||||||||||||  ||  ||||||||| || |   ||||||||||||| | ||||||||||   || |  ||||    
T  15811041 catgtgtgggcttgtgcctacattaaatttttagaaactattatttttagtagtataa---tgtatcaatagttcacattttgaccacacggtct-acac 15810946  T
Q  212 taa-cacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgt 310  Q
    | | |||||||||||| |   ||||| |||| |||||||||||||||||||||| ||| | |||| ||||||||||||||| |||   ||||||||| |     
T  15810945 ttatcacaaattatttttcttttggcccacatatatcatcatatatctcaaattattttttgatagtatgaatattatcaagaattggatgcaaaatcga 15810846  T
Q  311 gtgagaaatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgat 373  Q
     ||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15810845 atgagagatgatcggttaaatgattgtttagttatttatatagagaaatatatttttattgat 15810783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 102 - 376
Target Start/End: Complemental strand, 29368825 - 29368555
Alignment:
Q  102 tgtatgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaacacttttttagtagcatcaatatgtatcaatagttgatattttgaccattt 201  Q
    |||||||| ||  |||||||||||||||| ||||||||||||| | ||||  ||||||||||| || |||||  ||||||| |||||||||| || || |    
T  29368825 tgtatgtttgtgtatgtgtgggcttgtgc-tacacaaaattttcaaaaacttttttttagtagtat-aatat--atcaataattgatattttaac-atct 29368731  T
Q  202 gggcccacactaac-acaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaat 300  Q
     | |||||| | |  | |||| ||||||  ||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| || |  ||    
T  29368730 tgacccacatttattaaaaatcatttctctcttggctcacatatatcatcatatatctcaaattctttattgataatatgaatattatcaagaaccggat 29368631  T
Q  301 gcaaaattgtgtgagaaatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgatatt 376  Q
     || ||| |  || || |||||| ||||||||||||||   ||||||||||  ||||| ||| |||||||||||||    
T  29368630 acataatcgaatgtgagatgatcggttaaatgattgttcgattatttatataaagaaatatacttttattgatatt 29368555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 215 - 376
Target Start/End: Complemental strand, 4930825 - 4930665
Alignment:
Q  215 cacaaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtga 314  Q
    ||||||| ||||||| |||||  ||||||||||| ||| ||||||||||||||| | |||||||||||||||||||| ||||  |||  || | |  ||     
T  4930825 cacaaatcatttctttcttggtccacacatatca-catgtatctcaaattcttttttgataatatgaatattatcaagaatcggatgtgaagtcgaatgg 4930727  T
Q  315 gaaatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgatatt 376  Q
     | |||||||||||||||||| |||||||||||||||  ||||| |||||||||||||||||    
T  4930726 aagatgatcagttaaatgattatttagttatttatataaagaaatatatttttattgatatt 4930665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 399 - 519
Target Start/End: Complemental strand, 40763332 - 40763211
Alignment:
Q  399 tcacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaaccacaagcaacaacaatagtatagacctagtcttta 497  Q
    ||||||||  ||||||||| || ||||||||| ||||||||| ||||||| ||||||| |||||||| |||||| ||||| | |||||||||| ||| ||    
T  40763332 tcacaccaatataaactatgatctgtggagcaagtatcaatgacaaccaataatcaaatgtaaaccataagcaataacaacaatatagacctaatctata 40763233  T
Q  498 aaccaagtgcatagcaaaacca 519  Q
    ||||||||||||||||||||||    
T  40763232 aaccaagtgcatagcaaaacca 40763211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 411 - 523
Target Start/End: Complemental strand, 40751315 - 40751202
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcat 509  Q
    ||||||| || ||||||| | ||||||||| ||||||| || |||| ||||||||||||||| ||||| | |||||||||| ||| ||||||||||||||    
T  40751315 aaactatgatttgtggagtaagtatcaatgacaaccaataaccaaatgtaaaccacaagcaataacaacaatatagacctaatctataaaccaagtgcat 40751216  T
Q  510 agcaaaaccacaat 523  Q
    ||||||||||||||    
T  40751215 agcaaaaccacaat 40751202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 411 - 595
Target Start/End: Complemental strand, 27015860 - 27015677
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaata--gtatagacctagtctttaaaccaagtgca 508  Q
    ||||||| ||| |||||||| |||| |||||||| |||||| ||||||||| ||||||||||||||| |   |||| ||||||||| | || ||||||||    
T  27015860 aaactatgatgggtggagcaagtattaatggcaatcaacaaccaaagtaaatcacaagcaacaacaacaatatatatacctagtctat-aatcaagtgca 27015762  T
Q  509 tagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    || |||||||||||| |||| || | |||||||||||||||| ||  |||||||| ||| |||  ||| |||||||| |||||||||    
T  27015761 tatcaaaaccacaattcaaccaaagcataaacaagataaagagag-taaagaaaaaataacaca-ccaaaaaatgttcacccagttc 27015677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 399 - 595
Target Start/End: Complemental strand, 5058399 - 5058199
Alignment:
Q  399 tcacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa---gtaaaccacaagcaacaacaata--gtatagacctagtc 493  Q
    ||||||||  ||||| ||| ||||||||| || |||||||||||||||||||| ||||   || |||||||||||||||||| |   |||||||||||||    
T  5058399 tcacaccaatataaattatgatgtgtggaacaagtatcaatggcaaccaacaaccaaaaatgttaaccacaagcaacaacaacaatatatagacctagtc 5058300  T
Q  494 tttaaaccaagtgcatagcaaaaccacaatcc-aactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccag 592  Q
    | | || ||||||||||| ||||||| ||||| ||  ||||||||||||||||||||| ||  |||||||||||| ||   |||  ||||||| ||||||    
T  5058299 tat-aatcaagtgcatagtaaaaccataatccaaagcaaggaataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacccag 5058202  T
Q  593 ttc 595  Q
    |||    
T  5058201 ttc 5058199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 550
Target Start/End: Complemental strand, 213758 - 213666
Alignment:
Q  459 aaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatc-caactaaggaataaacaagataaaga 550  Q
    ||||||||||||| ||||| | |||||||||||||| | ||| |||||||||||||||||||||||  ||  |||||||||||||||||||||    
T  213758 aaaccacaagcaataacaacaatatagacctagtctattaactaagtgcatagcaaaaccacaatcaaaagcaaggaataaacaagataaaga 213666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 28278621 - 28278563
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaacaa 477  Q
    |||||||||||| |||||||||||||||||||| |||| | ||||||||||||||||||    
T  28278621 atgtgtggagcaagtatcaatggcaaccaacaaacaaaattaaccacaagcaacaacaa 28278563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 477
Target Start/End: Complemental strand, 40147610 - 40147509
Alignment:
Q  377 tgttgtgaatgcgtactcaaaa-tcacaccataataaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccacaagcaacaac 475  Q
    |||||||||| || |||||||| ||||||||  | ||||||| |||||||||||| |||| ||||| ||||||||| |||  ||||||||||||| ||||    
T  40147610 tgttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaagtattaatggaaaccaacaaccaagttaaaccacaagcagcaac 40147511  T
Q  476 aa 477  Q
    ||    
T  40147510 aa 40147509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 38351914 - 38351848
Alignment:
Q  93 agggacgggtgtatgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaacactttttt 159  Q
    |||||||| || |||||||  |||||||||||||||||| ||||||||  |||||||||||||||||    
T  38351914 agggacggatgcatgttggcacatgtgtgggcttgtgccaacacaaaaaatttagaaacactttttt 38351848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 17228912 - 17228971
Alignment:
Q  232 ttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaa 291  Q
    ||||| |||| ||||||||||||| |||||||||||| | ||||||||||||||| ||||    
T  17228912 ttggcccacatatatcatcatatagctcaaattcttttttgataatatgaatattgtcaa 17228971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 38747318 - 38747251
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaaca-atcaaagtaaaccacaagcaacaacaa 477  Q
    ||||||| |||||||||||| |||||||||||||||||||   |||| | ||||||||||||||||||    
T  38747318 aaactatgatgtgtggagcaagtatcaatggcaaccaacatcacaaaattaaccacaagcaacaacaa 38747251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 38351768 - 38351730
Alignment:
Q  253 atatctcaaattctttctcgataatatgaatattatcaa 291  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  38351768 atatctcaaattctttcttgataatatgaatattatcaa 38351730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 17228979 - 17229036
Alignment:
Q  316 aaatgatcagttaaatgattgtttagttatttatattgagaaagatatttttattgat 373  Q
    ||||||||| ||||||| |||||  |||||||| || |||||| ||||||||||||||    
T  17228979 aaatgatcaattaaatggttgttcggttatttacatagagaaaaatatttttattgat 17229036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 7e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 238 - 376
Target Start/End: Original strand, 28529007 - 28529145
Alignment:
Q  238 cacacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgt 337  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||  |||||||||||  ||||| |||||| |||| ||||||||    
T  28529007 cacacatatcatcatatatctcaaattctttcttgacaatatgattattatcaagaatcggatgcaaaattgaatgagagatgatcggttacatgattgt 28529106  T
Q  338 ttagttatttatattgagaaagatatttttattgatatt 376  Q
    |||||||||||||  |||||| |||||||||||||||||    
T  28529107 ttagttatttatacagagaaaaatatttttattgatatt 28529145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 118 - 368
Target Start/End: Original strand, 42530778 - 42531035
Alignment:
Q  118 tgtgggcttgtgcctacacaaaatttttagaaacacttttttagtagcatcaatatgtatcaatagttgatattttgaccatttgggcccacac-taaca 216  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||| || |  |||||||||||||||| ||||||||||| |  |  ||||| |||||    
T  42530778 tgtgggcttgtgcccacacaaaatttttagaaaccattttttagtagtat-ataatgtatcaatagttgacattttgaccatat-agttcacacttaaca 42530875  T
Q  217 caaattatttcttccttggctcacacatatcatcatatatctcaaattctttctcgataatatgaatattatca-ataatcaa-------atgcaaaatt 308  Q
    |||||||| | |  |||||| ||||| |||||||||||||||||||  |||||| ||||||||||||||||||| || |||||       |||| ||||     
T  42530876 caaattatatttctcttggcccacacttatcatcatatatctcaaaaactttcttgataatatgaatattatcatattatcaagaatcggatgcgaaatc 42530975  T
Q  309 gtgtgagaaatgatcagttaaatgattgtttagttatttatattgagaaagatattttta 368  Q
       ||||| |||||| ||||||||||||||||||||||||||| | |||| |||||||||    
T  42530976 aaatgagagatgatcggttaaatgattgtttagttatttatatagtgaaatatattttta 42531035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 419 - 595
Target Start/End: Complemental strand, 45727261 - 45727083
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaag-----taaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagca 513  Q
    |||||||||||| |||||||||||||| || || ||||      |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  45727261 atgtgtggagcaagtatcaatggcaactaataaccaaatgtaaataaaccacaagcaacaacaataatatagacctagtctataaactaagtgcatagca 45727162  T
Q  514 aaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    ||||||||||||||| || ||||||  |||||||||| ||  |||||||||||| ||   | | |||||||| |||||||||    
T  45727161 aaaccacaatccaaccaaagaataa--aagataaagagag-taaagaaaagataacaacactaaaaaatgttcacccagttc 45727083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 409 - 595
Target Start/End: Original strand, 35446710 - 35446898
Alignment:
Q  409 ataaactata--atgtgtggagcatgtatcaatggcaaccaacaatcaaagtaaaccaca---agcaacaacaatagtatagacctagtctttaaaccaa 503  Q
    ||||||||||  |||||||||||| ||||||||  |||||||||| ||||||||||||||   | ||||||||||| |||||| ||||||| | || |||    
T  35446710 ataaactatatgatgtgtggagcaagtatcaatcccaaccaacaaccaaagtaaaccacactcaacaacaacaata-tatagatctagtctat-aatcaa 35446807  T
Q  504 gtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    |||||||||||||||||||| |||| || | |||||||||||||||| ||  |||||||||||| ||   |||  ||||||| |||||||||    
T  35446808 gtgcatagcaaaaccacaattcaaccaaagcataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacccagttc 35446898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 241 - 376
Target Start/End: Complemental strand, 44719009 - 44718874
Alignment:
Q  241 acatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcaaaattgtgtgagaaatgatcagttaaatgattgttta 340  Q
    ||||||||||| |||||||||||||||||| |||||||||||| ||||||| | |   |||  |||| |  ||| |||| ||| ||||||||||||||||    
T  44719009 acatatcatcaaatatctcaaattctttcttgataatatgaattttatcaagatttggatgtgaaatcgaatgaaaaataatcggttaaatgattgttta 44718910  T
Q  341 gttatttatattgagaaagatatttttattgatatt 376  Q
    ||||||||||| |||||||||| || || |||||||    
T  44718909 gttatttatatagagaaagatacttctactgatatt 44718874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 432 - 550
Target Start/End: Complemental strand, 17450894 - 17450775
Alignment:
Q  432 gtatcaatggcaaccaacaatcaaa-gtaaaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaacta 530  Q
    ||||||||| ||||| | || |||| ||||| ||||||||||||||| | | || ||||| |||  |||||||||||||||||||||||||||| ||| |    
T  17450894 gtatcaatgacaaccgataaccaaatgtaaatcacaagcaacaacaacaatctaaacctaatctagaaaccaagtgcatagcaaaaccacaatctaacca 17450795  T
Q  531 aggaataaacaagataaaga 550  Q
    | | ||||||||||||||||    
T  17450794 aaggataaacaagataaaga 17450775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 419 - 556
Target Start/End: Original strand, 1631567 - 1631708
Alignment:
Q  419 atgtgtggagcatgtatcaatggcaaccaacaatcaaag-----taaaccacaagcaa---caacaatagtatagacctagtctttaaaccaagtgcata 510  Q
    |||||||||| | ||||||||| |||||||||| ||||      ||||||||||||||   |||||||| ||||||| |||||| ||| | ||||| |||    
T  1631567 atgtgtggagtaagtatcaatgacaaccaacaaccaaatataaataaaccacaagcaataacaacaata-tatagacttagtctgtaatc-aagtgtata 1631664  T
Q  511 gcaaaaccacaatccaactaaggaataaacaagataaagaaagcaa 556  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||    
T  1631665 gcaaaaccacaatccaa--aaggaataaacaagataaagagagcaa 1631708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 550
Target Start/End: Original strand, 42287959 - 42288080
Alignment:
Q  433 tatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaac 528  Q
    |||||||||||||||| || |||| |||||   |||||||||| ||||| | | |||| ||| |||  ||| ||||||||||| ||||||||||||||||    
T  42287959 tatcaatggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagaaaaaccacaatccaac 42288058  T
Q  529 taaggaataaacaagataaaga 550  Q
     |||||||||||||| ||||||    
T  42288059 caaggaataaacaagttaaaga 42288080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 33648454 - 33648371
Alignment:
Q  467 agcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    ||||||||||| | | ||| |||| ||| ||| ||||||||||||||||| ||||||  |||||| ||||||||||||||||||    
T  33648454 agcaacaacaacaatctaggcctaatctataagccaagtgcatagcaaaatcacaattaaactaaagaataaacaagataaaga 33648371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 550
Target Start/End: Complemental strand, 7451407 - 7451317
Alignment:
Q  460 aaccacaagcaacaacaatagtatagacctagtctttaaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaaga 550  Q
    |||||||||||| ||||| | | |||| ||| |||  ||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||    
T  7451407 aaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcataacaaaaccacaatcgaaccaaagaataaacaagataaaga 7451317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 34139570 - 34139626
Alignment:
Q  374 atttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    ||||||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  34139570 atttgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 34139626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 430
Target Start/End: Original strand, 723546 - 723600
Alignment:
Q  376 ttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    ||||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  723546 ttgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 723600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 430
Target Start/End: Original strand, 36987874 - 36987928
Alignment:
Q  376 ttgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    ||||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  36987874 ttgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 36987928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 42362713 - 42362660
Alignment:
Q  377 tgttgtgaatgcgtactcaaaatcacaccataataaactataatgtgtggagca 430  Q
    |||||||||| || ||||||||||||||||  | ||||||| ||||||||||||    
T  42362713 tgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagca 42362660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 411 - 595
Target Start/End: Original strand, 17829 - 18017
Alignment:
Q  411 aaactataatgtgtggagcatgtatcaatggcaaccaacaatcaaa-gtaaa---ccacaagcaacaacaatagtatagacctagtctttaaaccaagtg 506  Q
    ||||||| ||||||| |||| |||||||| |||||||| ||||||| |||||   |||||||||| ||||| | | |||| ||| |||  ||| ||| ||    
T  17829 aaactatgatgtgtgtagcaagtatcaatagcaaccaataatcaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaaatg 17928  T
Q  507 catagcaaaaccacaatccaa-ctaaggaataaacaagataaagaaagcaaaagaaaagataccacncccagaaaatgttgacccagttc 595  Q
    |||||||||||||||||| || | ||||||||||||||||||||| ||  |||||||||||| ||   |||  ||||||| |||||||||    
T  17929 catagcaaaaccacaatctaaccaaaggaataaacaagataaagagag-taaagaaaagataacaacaccaagaaatgttcacccagttc 18017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 619 times since January 2019
Visitors: 1099