View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0028Eco16 (Length: 129)

Name: NF0028Eco16
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0028Eco16
NF0028Eco16
[»] chr6 (2 HSPs)
chr6 (10-129)||(31005776-31005895)
chr6 (41-125)||(30937404-30937488)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 8e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 31005776 - 31005895
Alignment:
Q  10 attacccttgttgacatagatatattagatcaaaaatgtcctagagcaagaaaaaatgttacactttcaaatcttccattgtcttttagctcattagatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31005776 attacccttgttgacatagatatattagatcaaaaatgtcctagagcaagaaaaaatgttacactttcaaatcttccattgtcttttagctcattagatt 31005875  T
Q  110 tgaatcttagtttctatttc 129  Q
    ||||||||||||||||||||    
T  31005876 tgaatcttagtttctatttc 31005895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 30937404 - 30937488
Alignment:
Q  41 aaaaatgtcctagagcaagaaaaaatgttacactttcaaatcttccattgtcttttagctcattagatttgaatcttagtttcta 125  Q
    ||||||||| | || ||||||||||||||||||||||||| ||||| || |||||||||  ||| ||| | ||||||||| ||||    
T  30937404 aaaaatgtctttgaacaagaaaaaatgttacactttcaaaccttcctttatcttttagcaaatttgatctaaatcttagtatcta 30937488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University