View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Eco2 (Length: 350)
Name: NF0028Eco2
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Eco2 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Complemental strand, 44138359 - 44138020
Alignment:
| Q |
9 |
aacccgttactcggttgtgccgaaacaaagttcagtatgactttgtaacagattttttgtatcctttctagtagaacctgtttagaaactgctactgcat |
108 |
Q |
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| T |
44138359 |
aacccgttactcggttgtgccgaaacaaagttcagtatgactttgtaacagattttttgtatcctttctagtagaacctgtttagaaactgctactgcat |
44138260 |
T |
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| Q |
109 |
ttaggattaggatgggtgaactgaactatatcaataatgttattacccgtatggccattcactctcatgataaggatatatatccaatgcttatggctat |
208 |
Q |
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| T |
44138259 |
ttaggattaggatgagtgaactgaactat--caataatgttattacccgtatggccattcactctcatgataaggatatatatccaatgcttatggctat |
44138162 |
T |
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| Q |
209 |
ctgtttgtcctcatgcaagtgcatggaatcatattattatagaaagttctcaattcacacattggttataatgacttgtcataattcataaaagggtctt |
308 |
Q |
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| T |
44138161 |
ctgtttgtcctcatgcaagtgcatggaatcatattattatagaaagttctcaattcacacattggttataatgacttgtcataattcataaaagggtctt |
44138062 |
T |
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| Q |
309 |
ccatatctctcgctcttttgttggttcaatggaaatagcttc |
350 |
Q |
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| T |
44138061 |
ccatatctctcgctcttttgttggttcaatggaaatagcttc |
44138020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 50058630 - 50058298
Alignment:
| Q |
19 |
tcggttgtgccgaaacaaagttcagtatgactttgtaacagattttttgtatcctttctagtagaacctgtttagaaactgctactgcatttaggattag |
118 |
Q |
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| T |
50058630 |
tcggttgtaccgaaacaaagttaagtatgactttgtaacagattttttgtatcctttctagtagaacctgtttagaaactgctactgcatttaggattag |
50058531 |
T |
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| Q |
119 |
gatgggtgaactgaactatatcaataatgttattacccgtatggccattcactctcatgataagg------atatatatccaatgcttatggctatctgt |
212 |
Q |
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| T |
50058530 |
gatgggtgaactgaac--tatcaataatgttattacccgtatggccattcactctcttgataaggatgtatatatatatccaatgcttatggctatctgt |
50058433 |
T |
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| Q |
213 |
ttgtcctcatgcaagtgcatggaatcatattattatagaaagttctcaattcacacattggttataatgacttgtcataattcataaaagggtcttccat |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
50058432 |
ttgtcctcatgcaagtgcatggaatcgtattattatagcagcttctcaatt--cacattggttataatgacttgtcataactcataaaa-ggtcttccat |
50058336 |
T |
|
| Q |
313 |
atctctcgctcttttgttggttcaatggaaatagcttc |
350 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
50058335 |
atctctcgctcttttgttggttaaatggaaatagcttc |
50058298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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