View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Eco22 (Length: 658)
Name: NF0028Eco22
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Eco22 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 8 - 577
Target Start/End: Original strand, 35549866 - 35550448
Alignment:
| Q |
8 |
ggatttatgtgcaaaatttttaacaatgattgtgtgtatcaatgaaatgaaagcagtatgagaagtatgtaaaggttatgttttatttggaatttaataa |
107 |
Q |
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| T |
35549866 |
ggatttatgtgcaaaactttttacactgattgtgtgtatcaatgaaatgaaagcagtatgagaagtatgtgaaggttatgttttatttggaatttaataa |
35549965 |
T |
|
| Q |
108 |
tggatggaatgaaattgcagggtgcatgtttcacagcgagcatggtctaactagttatgagcatcccngtaagaagttgaangcagtggcaacgattgat |
207 |
Q |
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| T |
35549966 |
tggatggaatgaaattgcagggtgcatgtttcatagcgagcatggtctaactagttatgagcatccaagtaagaagttgaaggcagtggcaacgattgat |
35550065 |
T |
|
| Q |
208 |
agtgagggaactatgtgtggggccnacttctgtgttgactcccaatcaaggaagccaccaatgatgccacgtaatggaagngaagccaatttgtgcactt |
307 |
Q |
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| T |
35550066 |
agtgagggagctatgtgtggggccaacttctgtgttgactcccaaacaaggaagccaccaatgatgccacgtaatggaagtgaagccaatttgtgcactt |
35550165 |
T |
|
| Q |
308 |
ggggtacncaagcctgactcatctaatcntgatactatgatccaattcatggcaacaaaaatttatataaccatttttcttttcttcttcatttattcta |
407 |
Q |
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| T |
35550166 |
ggggtacacaagcctgactcatctaatcatgatactatgatccaattcatggcaacaaaaatttatataaccatttttcttttcttcttcatttattcta |
35550265 |
T |
|
| Q |
408 |
agagcgacataatttagaggagacnatcctttgttattactagtactttcaggattgctcacttttttccctttttcctg-------------ctagctt |
494 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
35550266 |
agagcgacataatttagaggagacaatcctttgttattactagtactttcaggattgctcacttttttccctttttcctgttggcttaattgactacttt |
35550365 |
T |
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| Q |
495 |
gttgtatatatgatactgattggaagttcaatatgacctaggtcatttgctacnttaataacangaagattaagttttgaatt |
577 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
35550366 |
gttgtatatatgatactgattggaagttcaatatgacctaggtcatttgctacattaataacaagaagattaagttttgaatt |
35550448 |
T |
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