View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0028Eco26 (Length: 510)
Name: NF0028Eco26
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Eco26 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] scaffold0534 (1 HSPs) |
| | |
|
| [»] scaffold0042 (2 HSPs) |
| | |
|
| [»] scaffold0599 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 7 - 510
Target Start/End: Original strand, 12634067 - 12634573
Alignment:
| Q |
7 |
atgcccaatatatggtaactactaacttcatgaattagactcanctcaaattctaagacacgcattaataagtatacgcaataattgttcgaaagataaa |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12634067 |
atgcccgatatatggtaactactaacttcatgaattagactcaactcaaattctaagacactcattaataagtatacataataattgttcgaaagataaa |
12634166 |
T |
|
| Q |
107 |
gagtataggaaagatatgttgtttacttgatagagtaaactcctccattaatgcatttattgaactgatctacaaaagcactcttagtttcgtcatcttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12634167 |
gagtataggaaagatatgttgtttacttgatagagtaaactcctccattgatgcatttattgaactgatctacaaaagcactcttagtttcgtcatcttt |
12634266 |
T |
|
| Q |
207 |
gaaattcgactccagtatctgcagcaaagctgttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagcc---gctacataa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
12634267 |
gaaattcgactccagtatctgcagcaaagctgttgttttagcccatgcaagtctctctagagacctctcgggctcaaatatgctagccgctgctacataa |
12634366 |
T |
|
| Q |
304 |
taagcaattaggagactctttttgctcaatccaaacccttctagttctgattccatgtaccacctaacagatagatatttagttgcaaatattcaaatgt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12634367 |
taagcaattaggagactctttttgctcaatccaaacccttctagttctgattccatgtaccacctaacagataaatatttagttgcaaatattcaaatgt |
12634466 |
T |
|
| Q |
404 |
tcattagttattgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttggatttcttcttcccattcaatataatgcatt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12634467 |
tcattagttattgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttggatttcttcttcccattcattataatgcatt |
12634566 |
T |
|
| Q |
504 |
gcttgac |
510 |
Q |
| |
|
||||||| |
|
|
| T |
12634567 |
gcttgac |
12634573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 115 - 510
Target Start/End: Complemental strand, 37960526 - 37960133
Alignment:
| Q |
115 |
gaaagatatgttgtttacttgatagagtaaactcctccattaatgcatttattgaactgatctacaaaagcactcttagtttcgtcatctttgaaattcg |
214 |
Q |
| |
|
||||||||| |||||||||| | ||||| | || |||||||||||||||||||||| |||||||||||| || ||||||| ||||||| |||||||| |
|
|
| T |
37960526 |
gaaagatattttgtttacttctttgagtagttttcttcattaatgcatttattgaactggtctacaaaagcagtcctagtttcttcatcttcgaaattcg |
37960427 |
T |
|
| Q |
215 |
actccagtatctgcagcaaagctgttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagccgct---acataataagcaat |
311 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| | |||||| |||||||||||||| |
|
|
| T |
37960426 |
actccagtatctgcaacaaagctgttgttttagcccatgcaagtctctctagagacctctcaggctcaaatatgttggccgctgctacataataagcaat |
37960327 |
T |
|
| Q |
312 |
taggagactctttttgctcaatccaaacccttctagttctgattccatgtaccacctaacagatagatatttagttgcaaatattcaaatgttcattagt |
411 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
37960326 |
caggagactctttttgcttaatccaaacccttcttgttctgattccatgtaccacctaatatatagatttttaattgcaaatattggaatgttcattagt |
37960227 |
T |
|
| Q |
412 |
tattgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttggatttcttcttcccattcaatataatgcattgcttgac |
510 |
Q |
| |
|
| ||||||| ||||||||||||||||| |||||||| | |||||||||||||||||| || || ||||| ||||||| ||||||||||||||||| |
|
|
| T |
37960226 |
tgttgctttgattgagtgaagcatgtt--agagtgttctctggttattactcttacctgtgtat---ttctttccattcatcataatgcattgcttgac |
37960133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 37960600 - 37960528
Alignment:
| Q |
14 |
atatatggtaactactaacttcatgaattagactcanctcaaattctaagacacgcattaataagtatacgcaataattgtt |
95 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||||||| ||||||| ||| |
|
|
| T |
37960600 |
atatatggtaactactaatttcatgaattagact---------ttttaagacacacattaataagtatacacaataatagtt |
37960528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 28050154 - 28049809
Alignment:
| Q |
14 |
atatatggtaactactaacttcatgaattagactcanctcaaattctaagacacgcattaataagtatacgcaataattgttcgaaagataaagagtata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
28050154 |
atatatggtaactactaacttcatgaattagacacaactcaaattttaagacacgcattaataagcatacacaataattgttagaaagata--------- |
28050064 |
T |
|
| Q |
114 |
ggaaagatatgttgtttacttgatagagtaaactcctccattaatgcatttattgaactgatctacaaaagcactcttagtttcgtcatctttgaaattc |
213 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
28050063 |
---------tgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatctttgaaattc |
28049973 |
T |
|
| Q |
214 |
gactccagtatctgcagcaaagctgttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagcc---gctacataataagcaa |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
28049972 |
gactccagtatttgcagcaaagctgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgctacataataagcaa |
28049873 |
T |
|
| Q |
311 |
ttaggagactctttttgctcaatccaaacccttctagttc----tgattccatgtaccacctaa |
370 |
Q |
| |
|
| | ||||| ||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
28049872 |
acaacatactctcattgctcaatccaaacccttatagttctgattgattccatgtaccacctaa |
28049809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 19851848 - 19851503
Alignment:
| Q |
14 |
atatatggtaactactaacttcatgaattagactcanctcaaattctaagacacgcattaataagtatacgcaataattgttcgaaagataaagagtata |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
19851848 |
atatatggtaactactaacttcatgaattagactcaactcaaattttaagacacacattaataagcatacacaataattgttagaaagata--------- |
19851758 |
T |
|
| Q |
114 |
ggaaagatatgttgtttacttgatagagtaaactcctccattaatgcatttattgaactgatctacaaaagcactcttagtttcgtcatctttgaaattc |
213 |
Q |
| |
|
||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||| |
|
|
| T |
19851757 |
---------tgttgtttactcgtctgtgtagtttcctccattaatgcatttattgaactgatctacaaaagcattcctagtttcttcatctttcaaattc |
19851667 |
T |
|
| Q |
214 |
gactccagtatctgcagcaaagctgttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagcc---gctacataataagcaa |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||||| ||||||||||| |||||| |||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
19851666 |
gactccagtatttgcagcaaagctgttgtttttgcacatgcaattctctctagagacctctcaggctcaaatatgctggccgctgctacataataagcaa |
19851567 |
T |
|
| Q |
311 |
ttaggagactctttttgctcaatccaaacccttctagttc----tgattccatgtaccacctaa |
370 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19851566 |
acaacatactctctttgctcaatccaaacccttctagttctgattgattccatgtaccacctaa |
19851503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 9409 - 9064
Alignment:
| Q |
14 |
atatatggtaactactaacttcatgaattagactcanctcaaattctaagacacgcattaataagtatacgcaataattgttcgaaagataaagagtata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
9409 |
atatatggtaactactaacttcatgaattagacacaactcaaattttaagacacgcattaataagcatacacaataattgttagaaagata--------- |
9319 |
T |
|
| Q |
114 |
ggaaagatatgttgtttacttgatagagtaaactcctccattaatgcatttattgaactgatctacaaaagcactcttagtttcgtcatctttgaaattc |
213 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||| || ||||||| |||||||||||| || |
|
|
| T |
9318 |
---------tgttgtttactcgtctgagtagtttcctccattaatgcatttattgaactggtctacaaaagcattcctagtttcttcatctttgaaaatc |
9228 |
T |
|
| Q |
214 |
gactccagtatctgcagcaaagctgttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagcc---gctacataataagcaa |
310 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
9227 |
gactccattatttgcagcaacgctgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgctacataataagcaa |
9128 |
T |
|
| Q |
311 |
ttaggagactctttttgctcaatccaaacccttctagttc----tgattccatgtaccacctaa |
370 |
Q |
| |
|
| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9127 |
acaacatactctccttgctcaatccaaacccttctagttctgattgattccatgtaccacctaa |
9064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 143; Significance: 7e-75; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 69 - 370
Target Start/End: Original strand, 11068 - 11371
Alignment:
| Q |
69 |
cattaataagtatacgcaataattgttcgaaagataaagagtataggaaagatatgttgtttacttgatagagtaaactcctccattaatgcatttattg |
168 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||||| |||||| ||||||||||||||||||| | || | |||||||||||||||||||||| |
|
|
| T |
11068 |
cattaataagcgtacacaataattgttagaaagataaatagtatatgaaagatatgttgtttactcgtctgaacagtttcctccattaatgcatttattg |
11167 |
T |
|
| Q |
169 |
aactgatctacaaaagcactcttagtttcgtcatctttgaaattcgactccagtatctgcagcaaagctgttgttttagcccatgcaagtctctctagag |
268 |
Q |
| |
|
|||||||||||||| | || ||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11168 |
aactgatctacaaaccct-tcctagtttcttcatctttgaaattcgactccagtatttgaagcaaagctgttgtttttgcccatgcaagtctctctagag |
11266 |
T |
|
| Q |
269 |
tcctctcgggctcacatatgct---agccgctacataataagcaattaggagactctttttgctcaatccaaacccttctagttctgattccatgtacca |
365 |
Q |
| |
|
|||||| |||||| ||||||| ||| ||||||| |||||||| | | ||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11267 |
acctctcaggctcaaatatgctggcagctgctacatgataagcaaacaacatactctctttgctcaatccaaacccttctagttctgattccatttacca |
11366 |
T |
|
| Q |
366 |
cctaa |
370 |
Q |
| |
|
||||| |
|
|
| T |
11367 |
cctaa |
11371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 404 - 510
Target Start/End: Original strand, 11384 - 11490
Alignment:
| Q |
404 |
tcattagttattgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttggatttcttcttcccattcaatataatgcatt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||| ||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
11384 |
tcattagttattgctttcattgagtgaagcattttagagagtatttcgtggttactacccttacctttggatttcttctttccattcatcataatgcatt |
11483 |
T |
|
| Q |
504 |
gcttgac |
510 |
Q |
| |
|
||||||| |
|
|
| T |
11484 |
gcttgac |
11490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 21 - 370
Target Start/End: Complemental strand, 3577 - 3228
Alignment:
| Q |
21 |
gtaactactaacttcatgaattagactcanctcaaattctaagacacgcattaataagtatacgcaataattgttcgaaagataaagagtataggaaaga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |||| ||||||||||| |||||||||| || ||| |||||| |
|
|
| T |
3577 |
gtaactactaacttcatgaattagactcaattcaaattttaagacac--attaataagcatacacaataattgttagaaagataaatagaatatgaaaga |
3480 |
T |
|
| Q |
121 |
tatgttgtttacttgatagagtaaactcctccattaatgcatttattgaactgatctacaaaagcactcttagtttcgtcatctttgaaattcgactcca |
220 |
Q |
| |
|
||||||||||| | | || | ||||||| |||||||||||||||||||||||||||| | || ||||||| | |||||||||||||||||||| |
|
|
| T |
3479 |
tatgttgtttaatcgtctgaacagtttcctccactaatgcatttattgaactgatctacaaaccct-tcctagtttctttatctttgaaattcgactcca |
3381 |
T |
|
| Q |
221 |
gtatctgcagcaaagctgttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgc---tagccgctacataataagcaattaggag |
317 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||| |||||| | || ||||||| |||||| | | | |
|
|
| T |
3380 |
gtatttgcagcaaagttgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggtcgctgctacatgataagccaacaacat |
3281 |
T |
|
| Q |
318 |
actctttttgctcaatccaaacccttctagttctgattccatgtaccacctaa |
370 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
3280 |
actctctttgctcaatccaaacccttctagtttttattccatttaccacctaa |
3228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 404 - 510
Target Start/End: Complemental strand, 3215 - 3109
Alignment:
| Q |
404 |
tcattagttattgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttggatttcttcttcccattcaatataatgcatt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||| ||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
3215 |
tcattagttattgctttcattgagtgaagcattttagagagtatttcgtggttactacccttacctttggatttcttctttccattcatcataatgcatt |
3116 |
T |
|
| Q |
504 |
gcttgac |
510 |
Q |
| |
|
||||||| |
|
|
| T |
3115 |
gcttgac |
3109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 21 - 370
Target Start/End: Complemental strand, 11911883 - 11911534
Alignment:
| Q |
21 |
gtaactactaacttcatgaattagactcanctcaaattctaagacacgcattaataagtatacgcaataattgttcgaaagataaagagtataggaaaga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |||| ||||||||||| |||||||||| || ||| |||||| |
|
|
| T |
11911883 |
gtaactactaacttcatgaattagactcaattcaaattttaagacac--attaataagcatacacaataattgttagaaagataaatagaatatgaaaga |
11911786 |
T |
|
| Q |
121 |
tatgttgtttacttgatagagtaaactcctccattaatgcatttattgaactgatctacaaaagcactcttagtttcgtcatctttgaaattcgactcca |
220 |
Q |
| |
|
||||||||||| | | || | ||||||| |||||||||||||||||||||||||||| | || ||||||| | |||||||||||||||||||| |
|
|
| T |
11911785 |
tatgttgtttaatcgtctgaacagtttcctccactaatgcatttattgaactgatctacaaaccct-tcctagtttctttatctttgaaattcgactcca |
11911687 |
T |
|
| Q |
221 |
gtatctgcagcaaagctgttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgc---tagccgctacataataagcaattaggag |
317 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||| |||||| | || ||||||| |||||| | | | |
|
|
| T |
11911686 |
gtatttgcagcaaagttgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggtcgctgctacatgataagccaacaacat |
11911587 |
T |
|
| Q |
318 |
actctttttgctcaatccaaacccttctagttctgattccatgtaccacctaa |
370 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
11911586 |
actctctttgctcaatccaaacccttctagttttaattccatttaccacctaa |
11911534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 404 - 510
Target Start/End: Complemental strand, 11911521 - 11911415
Alignment:
| Q |
404 |
tcattagttattgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttggatttcttcttcccattcaatataatgcatt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
11911521 |
tcattagttattgctttcattgagtgaagcatgttagagagtatttcgtggttactacccttacctttggatttcttctttccattcatcataatgcatt |
11911422 |
T |
|
| Q |
504 |
gcttgac |
510 |
Q |
| |
|
||||||| |
|
|
| T |
11911421 |
gcttgac |
11911415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 17231432 - 17231087
Alignment:
| Q |
14 |
atatatggtaactactaacttcatgaattagactcanctcaaattctaagacacgcattaataagtatacgcaataattgttcgaaagataaagagtata |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || |||||||| |||||||| |||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
17231432 |
atatatggtaactactaacttcttgaattagacacaactcaaattttaagacacacattaataagcatacacaataattgttagaaagata--------- |
17231342 |
T |
|
| Q |
114 |
ggaaagatatgttgtttacttgatagagtaaactcctccattaatgcatttattgaactgatctacaaaagcactcttagtttcgtcatctttgaaattc |
213 |
Q |
| |
|
||||||||||| | ||||| ||||||| ||||||||||||||||||| |||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
17231341 |
---------tgttgtttactcgtatgagtagtttcctccaataatgcatttattgaactggtctacaaaagcattcctagtttcttcatctttgaaattc |
17231251 |
T |
|
| Q |
214 |
gactccagtatctgcagcaaagctgttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagcc---gctacataataagcaa |
310 |
Q |
| |
|
|||||||||| |||| |||| |||||||||| |||||||||||||||||||||| || ||| |||||| ||||| | ||| |||||||||||||||| |
|
|
| T |
17231250 |
aactccagtatttgcaacaaatctgttgtttttgcccatgcaagtctctctagagacccctcaggctcaaatatgttggccgctgctacataataagcaa |
17231151 |
T |
|
| Q |
311 |
ttaggagactctttttgctcaatccaaacccttctagttc----tgattccatgtaccacctaa |
370 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17231150 |
acaacatactctctttgctcaatccaaacccttctagttctgattgattccatgtaccacctaa |
17231087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 415 - 510
Target Start/End: Original strand, 31151367 - 31151459
Alignment:
| Q |
415 |
tgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttggatttcttcttcccattcaatataatgcattgcttgac |
510 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
31151367 |
tgctttcattgagtgaaacatgttagagagtgttatgtggtttttattcttacctttggat---ttcttcccattcatcataatgcattgcttgac |
31151459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 660 times since January 2019
Visitors: 1100