View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Eco4 (Length: 316)
Name: NF0028Eco4
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Eco4 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 12708652 - 12708354
Alignment:
| Q |
17 |
taagaggtaattatgagggagaagagataccaataatggaagtaaaatcaattcaacgtaaaaagaagtttggcgaagatgaaacaccaaaaatggaaga |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12708652 |
taagaggtagttatgagggagaagagataccaataatggaagtaaaatcaattcaacgtaaaaagaagtttgacgaagatgaaacaccaaaaatggaaga |
12708553 |
T |
|
| Q |
117 |
aaaactttcagcagctgatcaaaatcttagaaagatttaaagaaggttcactcgatcggcccattacgcatttcagtccctaaatcgatttccctcgtga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12708552 |
aaaactttcagcagctgatcaaaatcttagaaagatttaaagaaggttcactcgattggcccattacgcatttcagtccctaaatcgatttccctcgtga |
12708453 |
T |
|
| Q |
217 |
ttaatgaactagaaaaccccctagaagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaaggtttaaaccattgcacaaccaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
12708452 |
ttaatgaactagaaaaccccctagaagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaagattcaaaccattgcacaaccaa |
12708354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 17274818 - 17274773
Alignment:
| Q |
268 |
tttgagcatctcaaattccttgaaaggtttaaaccattgcacaacc |
313 |
Q |
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| T |
17274818 |
tttgagcacctcaaattccttgaaagattcaaaccattacacaacc |
17274773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 16242073 - 16242147
Alignment:
| Q |
241 |
aagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaaggtttaaaccattgcacaaccaa |
315 |
Q |
| |
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||||||||||||||||||| || ||| |||||| | |||||||||||| |||| || ||||||||| |||||||| |
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| T |
16242073 |
aagaaagcttcttatgtcctttagaactttgagaacctcaaattccttaaaagattcaaaccattgaacaaccaa |
16242147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 23156926 - 23156874
Alignment:
| Q |
241 |
aagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaag |
293 |
Q |
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||||||||||||| ||||| ||| || |||||| | ||||||||||||||||| |
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| T |
23156926 |
aagaaagcttcttgtgtcctttgtaactttgagaaactcaaattccttgaaag |
23156874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 36537647 - 36537719
Alignment:
| Q |
241 |
aagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaaggtttaaaccattgcacaacc |
313 |
Q |
| |
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|||||||||||||||||| ||| || ||| |||| |||||||| ||| |||| || |||||||| ||||||| |
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| T |
36537647 |
aagaaagcttcttatgtcatttgaaactttaagcacctcaaattgcttaaaagattcaaaccattacacaacc |
36537719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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