View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028Eco5 (Length: 437)
Name: NF0028Eco5
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028Eco5 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 187 - 437
Target Start/End: Complemental strand, 20079127 - 20078880
Alignment:
| Q |
187 |
ataacaaacaactgttcttataattttagtagacataattttgccacattgttcacatgcaatgctaatgaaaattactacaatgtccgcaacactcttt |
286 |
Q |
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| T |
20079127 |
ataacaaacaactgttcttataattttagtagacataattttgccactttgttcacatgtaatgctaatgaaaattacaaaaatgtccctaacaccctat |
20079028 |
T |
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| Q |
287 |
ggaggtgtatattggggattattttataataaacgagtatctatcaataattattctttttgtaaggtagattaagtcaagcagatttccncgncttgna |
386 |
Q |
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| T |
20079027 |
ggaggtgtatattggggatt-tgataaaaaaaaaaagtgtctatcaatagtaattttttttgtaaggtagactgagtcaagcagatgtcgtcgtctcgta |
20078929 |
T |
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| Q |
387 |
aacaaatgatttctcattagttgtctgataaatttggatttanattctctc |
437 |
Q |
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| T |
20078928 |
aacagatgatttctcattagttg--tgataaatttggatttagattctctc |
20078880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 20085461 - 20085381
Alignment:
| Q |
9 |
tccaggtcattaaaatggtccatgtggcactgtcacatggacttcgcttagttaagtgtcggttgaaccaacaccgaggac |
89 |
Q |
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| T |
20085461 |
tccaggtcattaaaatggtccatgtggcactgtcacatggacttcgcttagttaagtgtcggttgaaccaacaccgaggac |
20085381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 282
Target Start/End: Complemental strand, 20085320 - 20085172
Alignment:
| Q |
150 |
gttgtaattggctccattgtagctgaaaatagagtcaataacaa----------------acaactgttcttataattttagtagacataattttgccac |
233 |
Q |
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| T |
20085320 |
gttgtaattggctccattgtagctgaaaatagagtcaataacaaacaagtgatataacaaacaaccgttcttataattttagtagacataattttgccac |
20085221 |
T |
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| Q |
234 |
attgttcacatgcaatgctaatgaaaattactacaatgtccgcaacact |
282 |
Q |
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| T |
20085220 |
attgttcgcatgtaatactaatgaaaattactaaaatgtccgtaacact |
20085172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 20079180 - 20079131
Alignment:
| Q |
150 |
gttgtaattggctccattgtagctgaaaatagagtcaataacaaacaact |
199 |
Q |
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| T |
20079180 |
gttgtaattggcaccattgtagctgaaaatagagtcaataacaaacaact |
20079131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 20071914 - 20071863
Alignment:
| Q |
386 |
aaacaaatgatttctcattagttgtctgataaatttggatttanattctctc |
437 |
Q |
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| T |
20071914 |
aaacatatgatttctcattagttgtttgataaatttggatttagattctctc |
20071863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 20079315 - 20079245
Alignment:
| Q |
15 |
tcattaaaatggtccatgtggcactgtcacatggacttcgcttagttaagtgtcggttgaaccaacaccga |
85 |
Q |
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| T |
20079315 |
tcattaaaatggtccatgtggcactatcaagtggactttcattagtcaagtgtcggttgaactaacaccga |
20079245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 20117364 - 20117309
Alignment:
| Q |
204 |
ttataattttagtagacataattttgccacattgttcacatgcaatgctaatgaaa |
259 |
Q |
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| T |
20117364 |
ttataattttagtagacacaactttaccacgttgttcacgtgtaatgctaatgaaa |
20117309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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