View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0028Eco9 (Length: 149)

Name: NF0028Eco9
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0028Eco9
NF0028Eco9
[»] chr5 (2 HSPs)
chr5 (10-58)||(29848246-29848294)
chr5 (20-57)||(33091440-33091477)
[»] chr7 (1 HSPs)
chr7 (5-58)||(36358785-36358838)
[»] chr6 (1 HSPs)
chr6 (20-58)||(14028459-14028497)
[»] chr2 (1 HSPs)
chr2 (20-58)||(14462566-14462604)
[»] chr1 (3 HSPs)
chr1 (20-58)||(40050991-40051029)
chr1 (20-54)||(35637008-35637042)
chr1 (21-58)||(7128000-7128037)
[»] chr3 (2 HSPs)
chr3 (20-57)||(41267358-41267395)
chr3 (21-57)||(48305056-48305092)


Alignment Details
Target: chr5 (Bit Score: 49; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 29848246 - 29848294
Alignment:
Q  10 tagtactgattgtaactcttctattatctaatgaagatgtttgaatttc 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29848246 tagtactgattgtaactcttctattatctaatgaagatgtttgaatttc 29848294  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33091477 - 33091440
Alignment:
Q  20 tgtaactcttctattatctaatgaagatgtttgaattt 57  Q
    |||||| |||||||||||||||||||||||||||||||    
T  33091477 tgtaacacttctattatctaatgaagatgtttgaattt 33091440  T

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Target: chr7 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 36358785 - 36358838
Alignment:
Q  5 acaattagtactgattgtaactcttctattatctaatgaagatgtttgaatttc 58  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36358785 acaactagtattgattgtaactcttctattatctaatgaagatgtttgaatttc 36358838  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 14028497 - 14028459
Alignment:
Q  20 tgtaactcttctattatctaatgaagatgtttgaatttc 58  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  14028497 tgtaacacttctattatctaatgaagatgtttgaatttc 14028459  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 14462604 - 14462566
Alignment:
Q  20 tgtaactcttctattatctaatgaagatgtttgaatttc 58  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  14462604 tgtaacacttctattatctaatgaagatgtttgaatttc 14462566  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 40050991 - 40051029
Alignment:
Q  20 tgtaactcttctattatctaatgaagatgtttgaatttc 58  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  40050991 tgtaacacttctattatctaatgaagatgtttgaatttc 40051029  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 35637042 - 35637008
Alignment:
Q  20 tgtaactcttctattatctaatgaagatgtttgaa 54  Q
    |||||| ||||||||||||||||||||||||||||    
T  35637042 tgtaacacttctattatctaatgaagatgtttgaa 35637008  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 7128000 - 7128037
Alignment:
Q  21 gtaactcttctattatctaatgaagatgtttgaatttc 58  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  7128000 gtaacacttctattatctaattaagatgtttgaatttc 7128037  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 41267395 - 41267358
Alignment:
Q  20 tgtaactcttctattatctaatgaagatgtttgaattt 57  Q
    |||||| |||||||||||||||||||||||||||||||    
T  41267395 tgtaacacttctattatctaatgaagatgtttgaattt 41267358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 48305092 - 48305056
Alignment:
Q  21 gtaactcttctattatctaatgaagatgtttgaattt 57  Q
    ||||| |||||||||||||||||||||||||||||||    
T  48305092 gtaacacttctattatctaatgaagatgtttgaattt 48305056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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