View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0028_high_1 (Length: 467)
Name: NF0028_high_1
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 29 - 457
Target Start/End: Original strand, 2434126 - 2434554
Alignment:
| Q |
29 |
agtatacagaataaacccccaacaagaaatatgttacagatacatggttaagttatgaacaaagcaaaaactccacaaggaaggaagagagacacaagta |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2434126 |
agtatacagaataaacccccaacaagaaatatgttacagatacacggttaagttatgaacaaagcaaaaactccacaaggaaggaagagagacacaagta |
2434225 |
T |
|
| Q |
129 |
gagaatgcagaattgtactcataatgacgaccctcaacaagattcaagttctggccaacttattaccaaattctctgatttcttaaacccctaaaaggac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2434226 |
gagaatgcagaattgtactcataatgacgaccctcaacaagattcaagttctggccaacttattaccaaattctctgatttcttaaacccctaaaaggac |
2434325 |
T |
|
| Q |
229 |
cctttgagggtcctcaaacgtgatcgttgcccttttgatcttgcttcgagaagctttgctttcaatgtattgtcttttgatccggaatgaactttggaag |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2434326 |
cctttgagggtcctcaaacgtgatcgttgcccttttgatcttgcttcgagaagctttgctttcaatgtattgtcttttgatccggaatgaactttggaag |
2434425 |
T |
|
| Q |
329 |
cctcggatatatcaagacttgccatccactgcctcacagggctagcctgattcctccatccagcattgctgcaagatgcttcaccataattattatgttc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2434426 |
cctcggatatatcaagacttgccatccactgcctcacagggctagcctgattcctccatccagcattgctgcaagatgcttcaccataattattatgttc |
2434525 |
T |
|
| Q |
429 |
ggcatgtttgttattgttaccactctctg |
457 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
2434526 |
ggcatgtttgttatttttaccactctctg |
2434554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 636 times since January 2019
Visitors: 1100