View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028_low_12 (Length: 263)
Name: NF0028_low_12
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 56232521 - 56232372
Alignment:
| Q |
1 |
caacaactccagccacatgaggacatgacatggatgttccagacatggtaatgaaaggaaccctacgtttatcaaagtccaattctgtgggactaatcgc |
100 |
Q |
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| T |
56232521 |
caacaactccagccacatgaggacatgacatggatgttccagacatggtaatgaaaggaaccctacgtttatcaaagtccaattctgtgggactaatcgc |
56232422 |
T |
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| Q |
101 |
tcctgagtacgcagcaataatgttcacaccgggtgcggttacatccggct |
150 |
Q |
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| T |
56232421 |
tcctgagtacgcagcaataatgttcacaccgggtgcggttacatccggct |
56232372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 56232326 - 56232288
Alignment:
| Q |
196 |
ctacgactaactcgtgtaatttggaaaatactaagttag |
234 |
Q |
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| T |
56232326 |
ctacgaccaactcgtgtaatttggaaaatactaagttag |
56232288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 39190336 - 39190187
Alignment:
| Q |
1 |
caacaactccagccacatgaggacatgacatggatgttccagacatggtaatgaaaggaaccctacgtttatcaaagtccaattctgtgggactaatcgc |
100 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||| ||||||||||| ||| |
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| T |
39190336 |
caacgactccagccacatgagggcatgacatggatgttccagacattgtcatgaaaggaaccctacgtttatcagaatccaattttgtgggactaaccgc |
39190237 |
T |
|
| Q |
101 |
tcctgagtacgcagcaataatgttcacaccgggtgcggttacatccggct |
150 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
39190236 |
tcctgagtaggcagcaataatgttcacaccgggtgcggttacatctggct |
39190187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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