View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028_low_16 (Length: 209)
Name: NF0028_low_16
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 46981453 - 46981332
Alignment:
| Q |
70 |
atatcttcgatcataagtttcggtgctatagagctaaacccattctaaaattaaagaccaataaaaaatagaggattaagaacaaaaacctggcaagaca |
169 |
Q |
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| T |
46981453 |
atatcttcgatcataagtttcggtgctatagagctaaacccattctaaaattaaagaccaataaaaaatagaggattaagaacaaaaacctggcaagaca |
46981354 |
T |
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| Q |
170 |
actccctggttggagacaagat |
191 |
Q |
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||||||| |||||||||||||| |
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| T |
46981353 |
actccctagttggagacaagat |
46981332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 46981537 - 46981488
Alignment:
| Q |
23 |
cacagacaccaacaccaacactggtagtaatataagaaaatgacataata |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46981537 |
cacagacaccaacaccaacactggtagtaatataagaaaatgacataata |
46981488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 12278827 - 12278867
Alignment:
| Q |
31 |
ccaacaccaacactggtagtaatataagaaaatgacataat |
71 |
Q |
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||||||||||||||| || |||| ||||||||||||||||| |
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| T |
12278827 |
ccaacaccaacactgataataatttaagaaaatgacataat |
12278867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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