View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028_low_8 (Length: 382)
Name: NF0028_low_8
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 46981332 - 46981453
Alignment:
| Q |
97 |
atcttgtctccaaccagggagttgtcttgccaggtttttgttcttaatcctctattttttattggtctttaattttagaatgggtttagctctatagcac |
196 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46981332 |
atcttgtctccaactagggagttgtcttgccaggtttttgttcttaatcctctattttttattggtctttaattttagaatgggtttagctctatagcac |
46981431 |
T |
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| Q |
197 |
cgaaacttatgatcgaagatat |
218 |
Q |
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|||||||||||||||||||||| |
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| T |
46981432 |
cgaaacttatgatcgaagatat |
46981453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 46981488 - 46981534
Alignment:
| Q |
216 |
tattatgtcattttcttatattactaccagtgttggtgttggtgtct |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46981488 |
tattatgtcattttcttatattactaccagtgttggtgttggtgtct |
46981534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 12278867 - 12278827
Alignment:
| Q |
217 |
attatgtcattttcttatattactaccagtgttggtgttgg |
257 |
Q |
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||||||||||||||||| |||| || ||||||||||||||| |
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| T |
12278867 |
attatgtcattttcttaaattattatcagtgttggtgttgg |
12278827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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