View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028_low_9 (Length: 291)
Name: NF0028_low_9
Description: NF0028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 56232598 - 56232878
Alignment:
| Q |
1 |
taacaccgttaggttactcatggaattattatatgattcattgagaattactctatctgataatatgatgtgttttctttcagctaggacaagggacaac |
100 |
Q |
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| T |
56232598 |
taacaccgttaggttactcatggaattatgatatgattcattgagaattactctatctgataatatgatgtgttttctttcagctaggacaagggacaac |
56232697 |
T |
|
| Q |
101 |
actcataaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggttctggtcacattagaccaaatcgtgccatggatcctggcttgg |
200 |
Q |
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| T |
56232698 |
actcacaaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggttctggtcacattagaccaaatcgtgccatggatcctggcttgg |
56232797 |
T |
|
| Q |
201 |
tctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataaccaagcacaaattactatgttctctg |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232798 |
tctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataaccaagcacaaattactatgttctctg |
56232878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 58 - 279
Target Start/End: Original strand, 39190602 - 39190823
Alignment:
| Q |
58 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactcataaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggt |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||| |||||| |
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| T |
39190602 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactgttaaacctatcgttgatgatattaatgtcaaggcaacaccatttgactacggt |
39190701 |
T |
|
| Q |
158 |
tctggtcacattagaccaaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataacc |
257 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |
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| T |
39190702 |
tctggtcacataagaccaaatcgtgccatggatcctggtttggtgtatgagttaaacatcaatgattacataaactttctttgtttcttaggttataacc |
39190801 |
T |
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| Q |
258 |
aagcacaaattactatgttctc |
279 |
Q |
| |
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|| ||||||||| |||||||| |
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| T |
39190802 |
aaacacaaattagcatgttctc |
39190823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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