View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028b14 (Length: 272)
Name: NF0028b14
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028b14 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 30448413 - 30448151
Alignment:
| Q |
7 |
aaaaactaactcatgggtaatcattctatacctgatcagacgaggaccattcactttttcttatatttgttcatcttctttattgtgctttgctatatca |
106 |
Q |
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| T |
30448413 |
aaaaaccaactcatgggtaatcattctatacctgatcagacgaggaccattcactttttcttatatttgttcatcttctttattgtgctttgctatatca |
30448314 |
T |
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| Q |
107 |
atctcgttggcaatgctcaatataaatatctaacgagtgtgatttctttgattaaacgaaagagtgaaggtatgttaatgcattgaacatgagtgttgat |
206 |
Q |
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| T |
30448313 |
atcttgttggcgatgctcaatataaatatctaacaagtgtgatttctttgattaaacgaaagagtgaaggtatgctaatgcattgaacatgagtgttgat |
30448214 |
T |
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| Q |
207 |
aaaaccattatatttaccaatttgttttctccgaatattattttctcacttttattatttaatgat |
272 |
Q |
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| T |
30448213 |
aaaactattatatttaccaatttgttttctccgaatatta-tttctcac--ttattatttaatgat |
30448151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 30420238 - 30420126
Alignment:
| Q |
51 |
gaccattcactttttcttatatttgttcatcttctttattgtgcttt-gctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgat |
149 |
Q |
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| T |
30420238 |
gaccattaattttgtcttatatttgttcatcttctttgttgtgcttttgttgtatcaatttcgttggaaatgctcaacataaatatctaacaagtgtgat |
30420139 |
T |
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| Q |
150 |
ttctttgattaaa |
162 |
Q |
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| T |
30420138 |
ttctttgattaaa |
30420126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 30432808 - 30432696
Alignment:
| Q |
51 |
gaccattcactttttcttatatttgttcatcttctttattgtgcttt-gctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgat |
149 |
Q |
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| T |
30432808 |
gaccattaattttatcttatatttgttcatcttctttcttgtgcttttgctgtatcaatctcgttgacgatgctcaagataaatatccaacaagtgtgat |
30432709 |
T |
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| Q |
150 |
ttctttgattaaa |
162 |
Q |
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| T |
30432708 |
ttctttgattaaa |
30432696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 30443047 - 30442962
Alignment:
| Q |
77 |
tcatcttctttattgtgctttgctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgatttctttgattaaa |
162 |
Q |
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| T |
30443047 |
tcatcttctttgttgtgctttgttgtatcaattttgttggcaatgctcaacataaatcttcgacgagtgtgatttctttgattaaa |
30442962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 30415183 - 30415085
Alignment:
| Q |
163 |
cgaaagagtgaaggtatgttaatgcattgaacatgagtgttgataaaaccattatatttaccaa----tttgttttctccgaatattattttctcactt |
257 |
Q |
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| T |
30415183 |
cgaaagagtgaagttatgttaatttagtgaacatgattgttaataaaactattatttttaccaattggtttgttttcttcgaatgtcattttctcactt |
30415085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 30419225 - 30419169
Alignment:
| Q |
201 |
gttgataaaaccattatatttaccaatttgttttctccgaatattattttctcactt |
257 |
Q |
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| T |
30419225 |
gttgataaaactattatttttatcaatttgttttctccgaatgtgattttctcactt |
30419169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 30415936 - 30415880
Alignment:
| Q |
201 |
gttgataaaaccattatatttaccaatttgttttctccgaatattattttctcactt |
257 |
Q |
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||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
30415936 |
gttgataaaactattatttttaccaatttgttttctctgaatgcgattttctcactt |
30415880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 30431090 - 30431049
Alignment:
| Q |
201 |
gttgataaaaccattatatttaccaatttgttttctccgaat |
242 |
Q |
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| T |
30431090 |
gttgataaaactattatttttaccaatttattttctccgaat |
30431049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 27655499 - 27655467
Alignment:
| Q |
130 |
aaatatctaacgagtgtgatttctttgattaaa |
162 |
Q |
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| T |
27655499 |
aaatatctatcgagtgtgatttctttgattaaa |
27655467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 30834260 - 30834292
Alignment:
| Q |
130 |
aaatatctaacgagtgtgatttctttgattaaa |
162 |
Q |
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| T |
30834260 |
aaatctctaacgagtgtgatttctttgattaaa |
30834292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 19592126 - 19592221
Alignment:
| Q |
67 |
ttatatttgttcatcttctttattgtgctttgctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgatttctttgattaaa |
162 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||| | |||||||||||||||||||||||| |
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| T |
19592126 |
ttatatttgttcatcttctttgttgtgctttgctatatcaattttgttggcaatgctcaacataaatcttcgacgagtgtgatttctttgattaaa |
19592221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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