View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028b19 (Length: 757)
Name: NF0028b19
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028b19 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 506
Target Start/End: Complemental strand, 28237521 - 28237032
Alignment:
| Q |
7 |
agggtatgggtgaaggctccaatattgtgactgaagagagagtaataatattgattccaatgatataaatataagtttgatatagtttgagataataaga |
106 |
Q |
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| T |
28237521 |
agggtatgggtgaaggctccaatattgtgactgaagagagagtaataatattgattccaatgatataaatataagtttga----------gataataaga |
28237432 |
T |
|
| Q |
107 |
agcaagcagtggaataatgaagggaatggaccacaataattgtggatattaactaagattgtggtagttgtggcgttaaggcaatgcttacctcaagttc |
206 |
Q |
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| T |
28237431 |
agcaagcagtggaataatgaagggaatggaccacaataattgtggatattaactaagattgtggtagttgtggcgttaaggcaatgcttacctcaagttc |
28237332 |
T |
|
| Q |
207 |
tcgtgtgtttggtgtcccgcaagcaaggccaaccacaagctgccatgcgctcaacacttgttagacactactcacaagccacctcttcttcttctttcta |
306 |
Q |
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| T |
28237331 |
tcgtgtgtttgttgtcccgcaagcaaggccaaccacaagctgccatgcgctcaacacttgttagacactactcacaagccacctcttcttcttctttcta |
28237232 |
T |
|
| Q |
307 |
tttggttatatagaaataatattttgacataaaattaaactt-caaattttaacatagtttagatggtttaatctggtttagtttaaatatgtgatcaat |
405 |
Q |
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| T |
28237231 |
tttagttatatagaaataatattttgacataaaattaaacttccaaattttaacatagtttatatgg-ttaatctggtttagtttaaatatgtgatcaat |
28237133 |
T |
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| Q |
406 |
tttatttagtggatgattgatgaatgtaatcataagatgttataacttctctaacaaaataaaaatcataattcattaaatatattgatagagatgatta |
505 |
Q |
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| T |
28237132 |
tatatttagtggatgattgatgaatgtaaccataagatgttataacttctctaacaaaataaaaatcataattcattaaatatattgatagagatgatta |
28237033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 543
Target Start/End: Complemental strand, 28237013 - 28236974
Alignment:
| Q |
504 |
taaaacattgatttcaggttctaattgttttatcatctat |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
28237013 |
taaaacattgatttcaggttctaattgttttatcatctat |
28236974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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