View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028b2 (Length: 103)
Name: NF0028b2
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028b2 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 51790793 - 51790887
Alignment:
| Q |
6 |
caatcaccaccaccagtgatagagaccaccgccgttcataatcaccataacaaatttgaatagtcatgcaaattttaaactacttttatatcact |
100 |
Q |
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| T |
51790793 |
caatcaccaccaccagtgagagagaccgccgccgttcataatcaccataacaaatttgaatagtcatgcaaattttaaactacttttatatcact |
51790887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 55633829 - 55633874
Alignment:
| Q |
54 |
aacaaatttgaatagtcatgcaaattttaaactacttttatatcac |
99 |
Q |
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| T |
55633829 |
aacaaatttgaataatcatacaaactttaaactacttttatatcac |
55633874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 7e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 10902462 - 10902374
Alignment:
| Q |
6 |
caatcaccaccaccagtgatagagaccaccgccgttcataatcaccataacaaatttgaatagtcatgcaaattttaaactacttttatat |
96 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
10902462 |
caatcaccaccaccagtga--gagaccaccgtcgttcataatcaccataacaaatttgaatagtcatggaaactttaaactacttttatat |
10902374 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 16436799 - 16436844
Alignment:
| Q |
54 |
aacaaatttgaatagtcatgcaaattttaaactacttttatatcac |
99 |
Q |
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|||||||||||||| |||| |||| ||||||||||||||||||||| |
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| T |
16436799 |
aacaaatttgaataatcatacaaactttaaactacttttatatcac |
16436844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 27890843 - 27890888
Alignment:
| Q |
54 |
aacaaatttgaatagtcatgcaaattttaaactacttttatatcac |
99 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||||||||||||| |
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| T |
27890843 |
aacaaatttgaataatcatacaaactttaaactacttttatatcac |
27890888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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